netDx: Software for building interpretable patient classifiers by multi-'omic data integration using patient similarity networks. - Shraddha Pai; Philipp Weber; Ruth Isserlin; Hussam Kaka; Shirley Hui; Muhammad Ahmad Shah; Luca Giudice; Rosalba Giugno; Anne Krogh Nøhr; Jan Baumbach; Gary D. Bader (F1000Research, 2020)

UmlsBERT: Clinical Domain Knowledge Augmentation of Contextual Embeddings Using the Unified Medical Language System Metathesaurus. - George Michalopoulos; Yuanxin Wang 001; Hussam Kaka; Helen H. Chen; Alexander Wong (NAACL-HLT, 2021)

Pretrained Neural Networks Accurately Identify Cancer Recurrence in Medical Record. - Hussam Kaka; George Michalopoulos; Sujan Subendran; Kathleen Decker; Pascal Lambert; Marshall Pitz; Harminder Singh; Helen H. Chen (MIE, 2022)