A scalability study of phylogenetic network inference methods using empirical datasets and simulations involving a single reticulation. - Hussein A. Hejase; Kevin J. Liu (BMC Bioinform., 2016)

Mapping the genomic architecture of adaptive traits with interspecific introgressive origin: a coalescent-based approach. - Hussein A. Hejase; Kevin J. Liu (BMC Genom., 2016)

Coal-Miner: A Statistical Method for GWA Studies of Quantitative Traits with Complex Evolutionary Origins. - Hussein A. Hejase; Natalie Vande Pol; Gregory M. Bonito; Patrick P. Edger; Kevin J. Liu (BCB, 2017)

FastNet: Fast and Accurate Statistical Inference of Phylogenetic Networks Using Large-Scale Genomic Sequence Data. - Hussein A. Hejase; Natalie Vande Pol; Gregory M. Bonito; Kevin J. Liu (RECOMB-CG, 2018)

Non-parametric and semi-parametric support estimation using SEquential RESampling random walks on biomolecular sequences. - Wei Wang 337; Jack Smith; Hussein A. Hejase; Kevin J. Liu (Algorithms Mol. Biol., 2020)