On the Pheromone Update Rules of Ant Colony Optimization Approaches for the Job Shop Scheduling Problem. - Dong Do Duc; Huy Q. Dinh; Huan Hoang Xuan (PRIMA, 2008)

ACOPHY: A Simple and General Ant Colony Optimization Approach for Phylogenetic Tree Reconstruction. - Huy Q. Dinh; Bui Quang Minh; Hoang Xuan Huan; Arndt von Haeseler (ANTS Conference, 2010)

AcoSeeD: An Ant Colony Optimization for Finding Optimal Spaced Seeds in Biological Sequence Search. - Dong Do Duc; Huy Q. Dinh; Thanh Hai Dang; Kris Laukens; Huan Hoang Xuan (ANTS, 2012)

GA_SVM: A Genetic Algorithm for Improving Gene Regulatory Activity Prediction. - Dong Do Duc; Tri-Thanh Le; Trung-Nghia Vu; Huy Q. Dinh; Hoang Xuan Huan (RIVF, 2012)

Epi-letters - how to describe epigenetic signatures. - Huy Q. Dinh (BMC Bioinform., 2012)

Isoform-level quantification for single-cell RNA sequencing. - Lu Pan; Huy Q. Dinh; Yudi Pawitan; Trung-Nghia Vu (Bioinform., 2022)