The Immune Epitope Database and Analysis Resource. - Alessandro Sette; Huynh-Hoa Bui; John Sidney; Philip E. Bourne; Søren Buus; Ward Fleri; R. Kubo; Ole Lund; D. Nemazee; Julia V. Ponomarenko; Muthu Sathiamurthy; Scott Stewart; et al. (PRIB, 2006)

Predicting population coverage of T-cell epitope-based diagnostics and vaccines. - Huynh-Hoa Bui; John Sidney; Kenny Dinh; Scott Southwood; Mark J. Newman; Alessandro Sette (BMC Bioinform., 2006)

Curation of complex, context-dependent immunological data. - Randi Vita; Kerrie Vaughan; Laura Zarebski; Nima Salimi; Ward Fleri; Howard Grey; Muthu Sathiamurthy; John Mokili; Huynh-Hoa Bui; Philip E. Bourne; Julia V. Ponomarenko; Romulo de Castro Jr.; et al. (BMC Bioinform., 2006)

A Community Resource Benchmarking Predictions of Peptide Binding to MHC-I Molecules. - Bjoern Peters; Huynh-Hoa Bui; Sune Frankild; Morten Nielsen 001; Claus Lundegaard; Emrah Kostem; Derek Basch; Kasper Lamberth; Mikkel Harndahl; Ward Fleri; Stephen S. Wilson; John Sidney; et al. (PLoS Comput. Biol., 2006)

Development of an epitope conservancy analysis tool to facilitate the design of epitope-based diagnostics and vaccines. - Huynh-Hoa Bui; John Sidney; Wei Li; Nicholas Fusseder; Alessandro Sette (BMC Bioinform., 2007)

WATGEN: An algorithm for modeling water networks at protein-protein interfaces. - Huynh-Hoa Bui; Alexandra J. Schiewe; Ian S. Haworth (J. Comput. Chem., 2007)

ElliPro: a new structure-based tool for the prediction of antibody epitopes. - Julia V. Ponomarenko; Huynh-Hoa Bui; Wei Li; Nicholas Fusseder; Philip E. Bourne; Alessandro Sette; Björn Peters (BMC Bioinform., 2008)

Immune epitope database analysis resource (IEDB-AR). - Qing Zhang; Peng Wang 014; Yohan Kim; Pernille Haste-Andersen; John E. Beaver; Philip E. Bourne; Huynh-Hoa Bui; Søren Buus; Sune Frankild; Jason Greenbaum; Ole Lund; Claus Lundegaard; et al. (Nucleic Acids Res., 2008)

Modeling of the Water Network at Protein-RNA Interfaces. - Yiyu Li; Brian T. Sutch; Huynh-Hoa Bui; Timothy K. Gallaher; Ian S. Haworth (J. Chem. Inf. Model., 2011)