A Trace-Driven Simulator For Palm OS Devices. - Hyrum Carroll; J. Kelly Flanagan; Satish Baniya (ISPASS, 2005)

Large Grain Size Stochastic Optimization Alignment. - Perry G. Ridge; Hyrum Carroll; Dan Sneddon; Mark J. Clement; Quinn Snell (BIBE, 2006)

Using Parsimony to Guide Maximum Likelihood Searches. - Kenneth Sundberg; Timothy O'Connor; Hyrum Carroll; Mark J. Clement; Quinn Snell (BIBE, 2007)

Analyzing Gene Relationships for Down Syndrome with Labeled Transition Graphs. - Neha Rungta; Hyrum Carroll; Eric G. Mercer; Randall J. Roper; Mark J. Clement; Quinn Snell (FMCAD, 2007)

DNA reference alignment benchmarks based on tertiary structure of encoded proteins. - Hyrum Carroll; Wesley A. Beckstead; Timothy O'Connor; Mark T. W. Ebbert; Mark J. Clement; Quinn Snell; David A. McClellan (Bioinform., 2007)

Phylogenies scores for exhaustive searches and parsimony scores searches. - Hyrum Carroll; Perry G. Ridge; Mark J. Clement; Quinn Snell (Int. J. Bioinform. Res. Appl., 2007)

Incomparability of Results Between Phylogenetic Search Programs. - Kenneth Sundberg; Hyrum Carroll; Quinn Snell; Mark J. Clement (BIOCOMP, 2008)

Parsimony accelerated Maximum Likelihood searches. - Kenneth Sundberg; Timothy O'Connor; Hyrum Carroll; Mark J. Clement; Quinn Snell (Int. J. Comput. Biol. Drug Des., 2008)

ChemAlign: Biologically Relevant Multiple Sequence Alignment Using Physicochemical Properties. - Hyrum Carroll; Mark J. Clement; Quinn Snell; David A. McClellan (BIBM, 2009)

Analysis of Long Branch Extraction. - Timothy O'Connor; Kenneth Sundberg; Hyrum Carroll; Mark J. Clement; Quinn Snell (BIOCOMP, 2009)

An open source phylogenetic search and alignment package. - Hyrum Carroll; Adam R. Teichert; Jonathan Krein; Kenneth Sundberg; Quinn Snell; Mark J. Clement (Int. J. Bioinform. Res. Appl., 2009)

PathGen: a transitive gene pathway generator. - Kendell Clement; Nathaniel Gustafson; Amanda Berbert; Hyrum Carroll; Christopher Merris; Ammon Olsen; Mark J. Clement; Quinn Snell; Jared Allen; Randall J. Roper (Bioinform., 2010)