Threshold Average Precision (TAP-k): a measure of retrieval designed for bioinformatics. - Hyrum D. Carroll; Maricel G. Kann; Sergey Sheetlin; John L. Spouge (Bioinform., 2010)

False Discovery Rate for Homology Searches. - Hyrum D. Carroll; Alex C. Williams; Anthony G. Davis; John L. Spouge (BSB, 2013)

A computational pipeline for crowdsourced transcriptions of Ancient Greek papyrus fragments. - Alex C. Williams; John F. Wallin; Haoyu Yu; Marco Perale; Hyrum D. Carroll; Anne-Françoise J. Lamblin; Lucy Fortson; Dirk Obbink; Chris J. Lintott; James H. Brusuelas (IEEE BigData, 2014)

Identification of Ancient Greek Papyrus Fragments Using Genetic Sequence Alignment Algorithms. - Alex C. Williams; Hyrum D. Carroll; John F. Wallin; James H. Brusuelas; Lucy Fortson; Anne-Françoise J. Lamblin; Haoyu Yu (eScience Workshops, 2014)

Proteus: A platform for born digital critical editions of literary and subliterary papyri. - Alex C. Williams; Annapaola Santarsiero; Chiara Meccariello; Gertjan Verhasselt; Hyrum D. Carroll; John F. Wallin; Dirk Obbink; James H. Brusuelas (Digital Heritage, 2015)

Improving Retrieval Efficacy of Homology Searches Using the False Discovery Rate. - Hyrum D. Carroll; Alex C. Williams; Anthony G. Davis; John L. Spouge (IEEE ACM Trans. Comput. Biol. Bioinform., 2015)

MultiDomainBenchmark: a multi-domain query and subject database suite. - Hyrum D. Carroll; John L. Spouge; Mileidy Gonzalez (BMC Bioinform., 2019)

Creating an OER Collection of Automatically Scored Practice Exercises for Computer Science 1. - Hillary Fleenor; Hyrum D. Carroll (SIGCSE, 2020)