Nonlinear Discovery of Slow Molecular Modes using Hierarchical Dynamics Encoders. - Wei Chen 044; Hythem Sidky; Andrew L. Ferguson (CoRR, 2019)

Capabilities and Limitations of Time-lagged Autoencoders for Slow Mode Discovery in Dynamical Systems. - Wei Chen 044; Hythem Sidky; Andrew L. Ferguson (CoRR, 2019)

Discovery of Self-Assembling π-Conjugated Peptides by Active Learning-Directed Coarse-Grained Molecular Simulation. - Kirill Shmilovich; Rachael A. Mansbach; Hythem Sidky; Olivia E. Dunne; Sayak Subhra Panda; John D. Tovar; Andrew L. Ferguson (CoRR, 2020)

SmartGraph API: Programmatic Knowledge Mining in Network-Pharmacology Setting. - Gergely Zahoránszky-Köhalmi; Brandon Walker; Nathan Miller; Brett Yang; Dhatri V. L. Penna; Jessica Maine; Timothy Sheils; Ke Wang; Jennifer King; Hythem Sidky; Sridhar Vuyyuru; Jeyaraman Soundarajan; et al. (J. Chem. Inf. Model., 2024)

National COVID Cohort Collaborative data enhancements: a path for expanding common data models. - Kellie M. Walters; Marshall Clark; Sofia Dard; Stephanie S. Hong; Elizabeth Kelly; Kristin Kostka; Adam M. Lee; Robert T. Miller; Michele Morris; Matvey B. Palchuk; Emily R. Pfaff; Adam B. Wilcox; et al. (J. Am. Medical Informatics Assoc., 2025)