GAzer: gene set analyzer. - Sang-Bae Kim; Sungjin Yang; Seon-Kyu Kim; Sang Cheol Kim; Hyun Goo Woo; David J. Volsky; Seon-Young Kim; In-Sun Chu (Bioinform., 2007)

Pan-cancer analysis of systematic batch effects on somatic sequence variations. - Ji-Hye Choi; Seong-Eui Hong; Hyun Goo Woo (BMC Bioinform., 2017)

SEQprocess: a modularized and customizable pipeline framework for NGS processing in R package. - Taewoon Joo; Ji-Hye Choi; Ji-Hye Lee; So Eun Park; Youngsic Jeon; Sae Hoon Jung; Hyun Goo Woo (BMC Bioinform., 2019)

scTyper: a comprehensive pipeline for the cell typing analysis of single-cell RNA-seq data. - Ji-Hye Choi; Hye In Kim; Hyun Goo Woo (BMC Bioinform., 2020)

CGV: Cancer Genome Viewer, a web service for integrative cancer genome and pharmacogenomic data analysis. - Ji-Hye Choi; Hui-Seon Choi; Seong-Ho Cho; Ji-Hye Lee; Hyun Goo Woo (Bioinform., 2022)

CCIDB: a manually curated cell-cell interaction database with cell context information. - Young Jin Noh; Hae In Lee; Ji-Hye Choi; Seong-Ho Cho; Yoon Hui Yi; Ji Hyun Lim; Eun Been Myung; Ye Ju Shin; Hyo Jin Shin; Hyun Goo Woo (Database J. Biol. Databases Curation, 2023)

NetPRS: SNP Interaction Aware Network-Based Polygenic Risk Score for Alzheimer's Disease. - Sunghong Park; Dong-Gi Lee; Juhyeon Kim; Doyoon Kim; Changhyung Hong; Sang Joon Son; Hyunwoong Roh; Kanghee Park; Dokyoon Kim; Hyunjung Shin; Hyun Goo Woo (BHI, 2024)

Identification of molecular subtypes of dementia by using blood-proteins interaction-aware graph propagational network. - Sunghong Park; Changhyung Hong; Sang Joon Son; Hyunwoong Roh; Doyoon Kim; Hyunjung Shin; Hyun Goo Woo (Briefings Bioinform., 2024)

Plasma protein-based identification of neuroimage-driven subtypes in mild cognitive impairment via protein-protein interaction aware explainable graph propagational network. - Sunghong Park; Doyoon Kim; Heirim Lee; Changhyung Hong; Sang Joon Son; Hyunwoong Roh; Dokyoon Kim; Yonghyun Nam; Dong-Gi Lee; Hyunjung Shin; Hyun Goo Woo (Comput. Biol. Medicine, 2024)

Optimization of vision transformer-based detection of lung diseases from chest X-ray images. - Jinsol Ko; Soyeon Park; Hyun Goo Woo (BMC Medical Informatics Decis. Mak., 2024)

NeuroFANN: identification of neuropathological subtypes in dementia with plasma proteins by using functionally annotated neural network. - Sunghong Park; Doyoon Kim; Ji-Hye Choi; Changhyung Hong; Sang Joon Son; Hyunwoong Roh; Hyunjung Shin; Hyun Goo Woo (Briefings Bioinform., 2025)

PPIxGPN: plasma proteomic profiling of neurodegenerative biomarkers with protein-protein interaction-based eXplainable graph propagational network. - Sunghong Park; Dong-Gi Lee; Juhyeon Kim; Seung Ho Kim; Hyeon Jin Hwang; Hyunjung Shin; Hyun Goo Woo (Briefings Bioinform., 2025)

Leveraging deep transfer learning and explainable AI for accurate COVID-19 diagnosis: Insights from a multi-national chest CT scan study. - Nhat Truong Pham; Jinsol Ko; Masaud Shah; Rajan Rakkiyappan; Hyun Goo Woo; Balachandran Manavalan (Comput. Biol. Medicine, 2025)

Prospective domain adaptation for longitudinal data. - Sunghong Park; Jeongheun Yeon; Dong-Gi Lee; Sang Joon Son; Hyun Goo Woo; Hyunjung Shin (Knowl. Based Syst., 2025)

KF-NIPT: K-mer and fetal fraction-based estimation of chromosomal anomaly from NIPT data. - Dongin Kim; Ji Yeon Sohn; Jin Hee Cho; Ji-Hye Choi; Gwi-young Oh; Hyun Goo Woo (BMC Bioinform., 2025)