PATRIC: The VBI PathoSystems Resource Integration Center. - E. E. Snyder; N. Kampanya; J. Lu; Eric K. Nordberg; H. R. Karur; Maulik Shukla; Jeetendra Soneja; Y. Tian; Tian Xue; Hyun Seung Yoo; Fengkai Zhang; C. Dharmanolla; et al. (Nucleic Acids Res., 2007)

Colour size illusion on liquid crystal displays and design guidelines for bioinformatics tools. - Hyun Seung Yoo; Tonya L. Smith-Jackson (Behav. Inf. Technol., 2011)

PATRIC, the bacterial bioinformatics database and analysis resource. - Alice R. Wattam; David Abraham; Oral Dalay; Terry Disz; Timothy Driscoll; Joseph L. Gabbard; Joseph J. Gillespie; Roger Gough; Deborah Hix; Ronald W. Kenyon; Dustin Machi; Chunhong Mao; et al. (Nucleic Acids Res., 2014)

Curation, integration and visualization of bacterial virulence factors in PATRIC. - Chunhong Mao; David Abraham; Alice R. Wattam; Meredith J. C. Wilson; Maulik Shukla; Hyun Seung Yoo; Bruno W. S. Sobral (Bioinform., 2015)

RNA-Rocket: an RNA-Seq analysis resource for infectious disease research. - Andrew S. Warren; Cristina Aurrecoechea; Brian P. Brunk; Prerak Desai; Scott J. Emrich; Gloria I. Giraldo-Calderón; Omar S. Harb; Deborah Hix; Daniel Lawson; Dustin Machi; Chunhong Mao; Michael McClelland; et al. (Bioinform., 2015)

Improvements to PATRIC, the all-bacterial Bioinformatics Database and Analysis Resource Center. - Alice R. Wattam; James J. Davis 002; Rida Assaf; Sébastien Boisvert; Thomas S. Brettin; Christopher Bun; Neal Conrad; Emily M. Dietrich; Terry Disz; Joseph L. Gabbard; Svetlana Gerdes; Christopher S. Henry; et al. (Nucleic Acids Res., 2017)

PATRIC as a unique resource for studying antimicrobial resistance. - Dionysios A. Antonopoulos; Rida Assaf; Ramy Karam Aziz; Thomas S. Brettin; Christopher Bun; Neal Conrad; James J. Davis 002; Emily M. Dietrich; Terry Disz; Svetlana Gerdes; Ronald W. Kenyon; Dustin Machi; et al. (Briefings Bioinform., 2019)

High-bypass Learning: Automated Detection of Tumor Cells That Significantly Impact Drug Response. - Justin M. Wozniak; Hyun Seung Yoo; Jamaludin Mohd-Yusof; Bogdan Nicolae; Nicholson T. Collier; Jonathan Ozik; Thomas S. Brettin; Rick Stevens (MLHPC/AI4S@SC, 2020)

A Systematic Approach to Featurization for Cancer Drug Sensitivity Predictions with Deep Learning. - Austin Clyde; Tom Brettin; Alexander Partin; Maulik Shaulik; Hyun Seung Yoo; Yvonne A. Evrard; Yitan Zhu; Fangfang Xia; Rick Stevens (CoRR, 2020)

Ensemble Transfer Learning for the Prediction of Anti-Cancer Drug Response. - Yitan Zhu; Thomas S. Brettin; Yvonne A. Evrard; Alexander Partin; Fangfang Xia; Maulik Shukla; Hyun Seung Yoo; James H. Doroshow; Rick Stevens (CoRR, 2020)

The PATRIC Bioinformatics Resource Center: expanding data and analysis capabilities. - James J. Davis 002; Alice R. Wattam; Ramy K. Aziz; Thomas S. Brettin; Ralph Butler; Rory Butler; Philippe Chlenski; Neal Conrad; Allan Dickerman; Emily M. Dietrich; Joseph L. Gabbard; Svetlana Gerdes; et al. (Nucleic Acids Res., 2020)

Stream-AI-MD: streaming AI-driven adaptive molecular simulations for heterogeneous computing platforms. - Alexander Brace; Michael Salim; Vishal Subbiah; Heng Ma; Murali Emani; Anda Trifan; Austin R. Clyde; Corey Adams; Thomas D. Uram; Hyun Seung Yoo; Andew Hock; Jessica Liu; et al. (PASC, 2021)

A genomic data resource for predicting antimicrobial resistance from laboratory-derived antimicrobial susceptibility phenotypes. - Margo VanOeffelen; Marcus Nguyen; Derya Aytan-Aktug; Thomas S. Brettin; Emily M. Dietrich; Ronald W. Kenyon; Dustin Machi; Chunhong Mao; Robert Olson; Gordon D. Pusch; Maulik Shukla; Rick Stevens; et al. (Briefings Bioinform., 2021)

Learning curves for drug response prediction in cancer cell lines. - Alexander Partin; Thomas S. Brettin; Yvonne A. Evrard; Yitan Zhu; Hyun Seung Yoo; Fangfang Xia; Songhao Jiang; Austin Clyde; Maulik Shukla; Michael Fonstein; James H. Doroshow; Rick L. Stevens (BMC Bioinform., 2021)

Protein-Ligand Docking Surrogate Models: A SARS-CoV-2 Benchmark for Deep Learning Accelerated Virtual Screening. - Austin Clyde; Thomas S. Brettin; Alexander Partin; Hyun Seung Yoo; Yadu N. Babuji; Ben Blaiszik; André Merzky; Matteo Turilli; Shantenu Jha; Arvind Ramanathan; Rick Stevens (CoRR, 2021)

A cross-study analysis of drug response prediction in cancer cell lines. - Fangfang Xia; Jonathan E. Allen; Prasanna Balaprakash; Thomas S. Brettin; Cristina Garcia-Cardona; Austin Clyde; Judith D. Cohn; James H. Doroshow; Xiaotian Duan; Veronika Dubinkina; Yvonne A. Evrard; Ya Ju Fan; et al. (Briefings Bioinform., 2022)

Introducing the Bacterial and Viral Bioinformatics Resource Center (BV-BRC): a resource combining PATRIC, IRD and ViPR. - Robert D. Olson; Rida Assaf; Thomas S. Brettin; Neal Conrad; Clark Cucinell; James J. Davis 002; Donald M. Dempsey; Allan Dickerman; Emily M. Dietrich; Ronald W. Kenyon; Mehmet Kuscuoglu; Elliot J. Lefkowitz; et al. (Nucleic Acids Res., 2023)