Aligning ontologies with subsumption and equivalence relations in Linked Data. - Nansu Zong; Sejin Nam; Jae-Hong Eom; Jinhyun Ahn; Hyunwhan Joe; Hong-Gee Kim (Knowl. Based Syst., 2015)

BiDIP: a Biological Data Integration Platform for Transcriptome Analysis. - Junho Park; Min-Ji Kim; Eung-Hee Kim; Sung-Kwon Yang; Sungin Lee; Jin-Muk Lim; Hyunwhan Joe; Kyung-Sik Ha; Hong-Gee Kim (BMDID@ISWC, 2016)

Question Answering as a Language-game. - Sueun Jang; Hyunwhan Joe; Yongju Lee 001; Hong-Gee Kim (JIST (Workshops & Posters), 2017)

Extending DUDES for Ranked Template Generation. - Hyunwhan Joe; Sung-Kwon Yang; Yongsun Shim; Sueun Jang; Hong-Gee Kim (JIST (Workshops & Posters), 2017)

Graph-based Entity Linking using Shortest Path. - Yongsun Shim; Sung-Kwon Yang; Hyunwhan Joe; Hong-Gee Kim (JIST (Workshops & Posters), 2017)

A Method for Building Ontology Property Explanations. - Sung-Kwon Yang; Yongju Lee 001; Hyunwhan Joe; Hong-Gee Kim (JIST (Workshops & Posters), 2017)

CICO: Chemically Induced Carcinogenesis Ontology. - Sungmin Yang; Hyunwhan Joe; Sung-Kwon Yang; Hong-Gee Kim (JIST, 2019)

Multi-channel PINN: investigating scalable and transferable neural networks for drug discovery. - Munhwan Lee; Hyeyeon Kim; Hyunwhan Joe; Hong-Gee Kim (J. Cheminformatics, 2019)

Sequential routing framework: Fully capsule network-based speech recognition. - Kyungmin Lee; Hyunwhan Joe; Hyeontaek Lim; Kwangyoun Kim; Sungsoo Kim; Chang Woo Han; Hong-Gee Kim (Comput. Speech Lang., 2021)

Biomedical Entity Explorer: A Web Server for Biomedical Entity Exploration. - Jinuk Jung; Hyunwhan Joe; Kyung-Sik Ha; Jin-Muk Lim; Hong-Gee Kim (J. Comput. Biol., 2021)

Gene-centric multi-omics integration with convolutional encoders for cancer drug response prediction. - Munhwan Lee; Pil-Jong Kim; Hyunwhan Joe; Hong-Gee Kim (Comput. Biol. Medicine, 2022)

Multi-label classification with XGBoost for metabolic pathway prediction. - Hyunwhan Joe; Hong-Gee Kim (BMC Bioinform., 2024)

Developing Multi-Agent LLM Applications Through Continuous Human-LLM Co-Programming. - Hui Song; Arda Goknil; Xiaojun Jiang; Espen Melum; Hyunwhan Joe; Caterina Gazzotti; Valerio Frascolla; Adela Nedisan Videsjorden; Phu Nguyen (CAIN, 2025)