HiXCorr: a portable high-speed XCorr engine for high-resolution tandem mass spectrometry. - Hyunwoo Kim 003; Hosung Jo; Heejin Park; Eunok Paek (Bioinform., 2015)

Massive OceanColor Data Processing and Analysis System: TuPiX-OC. - Jung-Ho Um; Sunggeun Han; Hyunwoo Kim 003; Kyongseok Park (eScience, 2017)

Study on distributed and parallel non-linear optimization algorithm for ocean color remote sensing data. - Jung-Ho Um; Sunggeun Han; Hyunwoo Kim 003; Kyongseok Park (HPEC, 2017)

ACTG: novel peptide mapping onto gene models. - Seung-Hyuk Choi; Hyunwoo Kim 003; Eunok Paek (Bioinform., 2017)

Accelerating a cross-correlation score function to search modifications using a single GPU. - Hyunwoo Kim 003; Sunggeun Han; Jung-Ho Um; Kyongseok Park (BMC Bioinform., 2018)

DistME: A Fast and Elastic Distributed Matrix Computation Engine using GPUs. - Donghyoung Han; Yoon-Min Nam; Jihye Lee; Kyongseok Park; Hyunwoo Kim 003; Min-Soo Kim 002 (SIGMOD Conference, 2019)

Target-small decoy search strategy for false discovery rate estimation. - Hyunwoo Kim 003; Sangjeong Lee; Heejin Park (BMC Bioinform., 2019)

Making Reproducible Research Data by Utilizing Persistent ID Graph Structure. - Jung-Ho Um; Myeongseok Choi; Hyunwoo Kim 003; Sanghwan Lee (BigComp, 2020)

False discovery rate estimation using candidate peptides for each spectrum. - Sangjeong Lee; Heejin Park; Hyunwoo Kim 003 (BMC Bioinform., 2022)

Progressive search in tandem mass spectrometry. - Yoonsung Joh; Kangbae Lee; Hyunwoo Kim 003; Heejin Park (BMC Bioinform., 2023)

Bidirectional de novo peptide sequencing using a transformer model. - Sangjeong Lee; Hyunwoo Kim 003 (PLoS Comput. Biol., 2024)