Combined ab initio/empirical approach for optimization of Lennard-Jones parameters for polar-neutral compounds. - I-Jen Chen; Daxu Yin; Alexander D. MacKerell Jr. (J. Comput. Chem., 2002)

Drug-like Annotation and Duplicate Analysis of a 23-Supplier Chemical Database Totalling 2.7 Million Compounds. - Nicolas Baurin; R. Baker; Christine M. Richardson; I-Jen Chen; Nicolas Foloppe; Andrew Potter; A. Jordan; Stephen D. Roughley; Martin J. Parratt; P. Greaney; D. Morley; Roderick E. Hubbard (J. Chem. Inf. Model., 2004)

Conformational Sampling of Druglike Molecules with MOE and Catalyst: Implications for Pharmacophore Modeling and Virtual Screening. - I-Jen Chen; Nicolas Foloppe (J. Chem. Inf. Model., 2008)

Lessons for fragment library design: analysis of output from multiple screening campaigns. - I-Jen Chen; Roderick E. Hubbard (J. Comput. Aided Mol. Des., 2009)

Drug-like Bioactive Structures and Conformational Coverage with the LigPrep/ConfGen Suite: Comparison to Programs MOE and Catalyst. - I-Jen Chen; Nicolas Foloppe (J. Chem. Inf. Model., 2010)

Practical Considerations to Calibrate Generator Model Parameters Using Phasor Measurements. - Chin-Chu Tsai; Le-Ren Chang-Chien; I-Jen Chen; Chia-Jung Lin; Wei-Jen Lee; Chin-Chung Wu; Hung-Wei Lan (IEEE Trans. Smart Grid, 2017)

Comparative Study of Allosteric GPCR Binding Sites and Their Ligandability Potential. - Sonja Peter; Lydia Siragusa; Morgan Thomas; Tommaso Palomba; Simon Cross; Noel M. O'Boyle; Dávid Bajusz; György G. Ferenczy; György M. Keserü; Giovanni Bottegoni; Brian Joseph Bender; I-Jen Chen; et al. (J. Chem. Inf. Model., 2024)