Derived Data Update in Semantic Databases. - I-Min A. Chen; Dennis McLeod (VLDB, 1989)

An Approach to Deriving Object Hierarchies from Database Schema and Contents. - I-Min A. Chen; Rei-Chi Lee (ISMIS, 1991)

A Unified Approach to Data and Meta-data Modifications for Data/Knowledge Bases. - I-Min A. Chen; Dennis McLeod (Theoretical Studies in Computer Science, 1992)

Data Management Tools for Genomic Applications: A Progress Report. - Victor M. Markowitz; I-Min A. Chen (DEXA, 1993)

Local Ambiguity and Derived Data Update. - I-Min A. Chen; Richard Hull 001; Dennis McLeod (RIDE-ADS, 1994)

Modeling Scientific Experiments with an Object Data Model. - I-Min A. Chen; Victor M. Markowitz (ICDE, 1995)

An Overview of the Object-Protocol Model (OPM) and OPM Data Management Tools. - I-Min A. Chen; Victor M. Markowitz (Inf. Syst., 1995)

An Execution Model for Limited Ambiguity Rules and Its Application to Derived Data Update. - I-Min A. Chen; Richard Hull 001; Dennis McLeod (ACM Trans. Database Syst., 1995)

Version Management for Scientific Databases. - I-Min A. Chen; Victor M. Markowitz; Stanley Letovsky; Peter Li; Kenneth H. Fasman (EDBT, 1996)

Query Answering Using Discovered Rules. - I-Min A. Chen (ICDE, 1996)

Developing and Accessing Scientific Databases with the OPM Data Management Tools. - I-Min A. Chen; Anthony Kosky; Victor M. Markowitz; Ernest Szeto (ICDE, 1997)

Developing and Accessing Scientific Databases with the Object-Protocol (OPM) Data Management Tools - I-Min A. Chen; Anthony Kosky; Victor M. Markowitz; Ernest Szeto (SSDBM, 1997)

Constructing and Maintaining Scientific Database Views in the Framework of the Object-Protocol Model. - I-Min A. Chen; Anthony Kosky; Victor M. Markowitz; Ernest Szeto (SSDBM, 1997)

Integrating Information from Multiple Independently Developed Data Sources. - I-Min A. Chen; Doron Rotem (CIKM, 1998)

Exploring Heterogeneous Biological Databases: Tools and Applications. - Anthony Kosky; I-Min A. Chen; Victor M. Markowitz; Ernest Szeto (EDBT, 1998)

Advanced Query Mechanisms for Biological Databases. - I-Min A. Chen; Anthony Kosky; Victor M. Markowitz; Ernest Szeto; Thodoros Topaloglou (ISMB, 1998)

Gene Expression Data Management: A Case Study. - Victor M. Markowitz; I-Min A. Chen; Anthony Kosky (EDBT, 2002)

Integration Challenges in Gene Expression Data Management. - Victor M. Markowitz; John Campbell; I-Min A. Chen; Anthony Kosky; Krishna Palaniappan; Thodoros Topaloglou (Bioinformatics, 2003)

IMG/M: a data management and analysis system for metagenomes. - Victor M. Markowitz; Natalia Ivanova; Ernest Szeto; Krishna Palaniappan; Ken Chu; Daniel Dalevi; I-Min A. Chen; Yuri Grechkin; Inna Dubchak; Iain Anderson; Athanasios Lykidis; Konstantinos Mavrommatis; et al. (Nucleic Acids Res., 2008)

The integrated microbial genomes (IMG) system in 2007: data content and analysis tool extensions. - Victor M. Markowitz; Ernest Szeto; Krishna Palaniappan; Yuri Grechkin; Ken Chu; I-Min A. Chen; Inna Dubchak; Iain Anderson; Athanasios Lykidis; Konstantinos Mavrommatis; Natalia Ivanova; Nikos Kyrpides (Nucleic Acids Res., 2008)

IMG ER: a system for microbial genome annotation expert review and curation. - Victor M. Markowitz; Konstantinos Mavrommatis; Natalia Ivanova; I-Min A. Chen; Ken Chu; Nikos Kyrpides (Bioinform., 2009)

The Genomes On Line Database (GOLD) in 2009: status of genomic and metagenomic projects and their associated metadata. - Konstantinos Liolios; I-Min A. Chen; Konstantinos Mavrommatis; Nektarios Tavernarakis; Philip Hugenholtz; Victor M. Markowitz; Nikos Kyrpides (Nucleic Acids Res., 2010)

The integrated microbial genomes system: an expanding comparative analysis resource. - Victor M. Markowitz; I-Min A. Chen; Krishna Palaniappan; Ken Chu; Ernest Szeto; Yuri Grechkin; Anna Ratner; Iain Anderson; Athanasios Lykidis; Konstantinos Mavrommatis; Natalia Ivanova; Nikos Kyrpides (Nucleic Acids Res., 2010)

IMG/M: the integrated metagenome data management and comparative analysis system. - Victor M. Markowitz; I-Min A. Chen; Ken Chu; Ernest Szeto; Krishna Palaniappan; Yuri Grechkin; Anna Ratner; Biju Jacob; Amrita Pati; Marcel Huntemann; Konstantinos Liolios; Ioanna Pagani; et al. (Nucleic Acids Res., 2012)

IMG: the integrated microbial genomes database and comparative analysis system. - Victor M. Markowitz; I-Min A. Chen; Krishna Palaniappan; Ken Chu; Ernest Szeto; Yuri Grechkin; Anna Ratner; Biju Jacob; Jinghua Huang; Peter Williams; Marcel Huntemann; Iain Anderson; et al. (Nucleic Acids Res., 2012)

The Genomes OnLine Database (GOLD) v.4: status of genomic and metagenomic projects and their associated metadata. - Ioanna Pagani; Konstantinos Liolios; Jakob Jansson; I-Min A. Chen; Tatyana Smirnova; Bahador Nosrat; Victor M. Markowitz; Nikos Kyrpides (Nucleic Acids Res., 2012)

Maintaining a microbial genome & metagenome data analysis system in an academic setting. - I-Min A. Chen; Victor M. Markowitz; Ernest Szeto; Krishna Palaniappan; Ken Chu (SSDBM, 2014)

IMG/M 4 version of the integrated metagenome comparative analysis system. - Victor M. Markowitz; I-Min A. Chen; Ken Chu; Ernest Szeto; Krishna Palaniappan; Manoj Pillay; Anna Ratner; Jinghua Huang; Ioanna Pagani; Susannah Tringe; Marcel Huntemann; Konstantinos Billis; et al. (Nucleic Acids Res., 2014)

IMG 4 version of the integrated microbial genomes comparative analysis system. - Victor M. Markowitz; I-Min A. Chen; Krishna Palaniappan; Ken Chu; Ernest Szeto; Manoj Pillay; Anna Ratner; Jinghua Huang; Tanja Woyke; Marcel Huntemann; Iain Anderson; Konstantinos Billis; et al. (Nucleic Acids Res., 2014)

IMG/M: integrated genome and metagenome comparative data analysis system. - I-Min A. Chen; Victor M. Markowitz; Ken Chu; Krishna Palaniappan; Ernest Szeto; Manoj Pillay; Anna Ratner; Jinghua Huang; Evan Andersen; Marcel Huntemann; Neha Varghese; Michalis Hadjithomas; et al. (Nucleic Acids Res., 2017)

IMG-ABC: new features for bacterial secondary metabolism analysis and targeted biosynthetic gene cluster discovery in thousands of microbial genomes. - Michalis Hadjithomas; I-Min A. Chen; Ken Chu; Jinghua Huang; Anna Ratner; Krishna Palaniappan; Evan Andersen; Victor M. Markowitz; Nikos Kyrpides; Natalia Ivanova (Nucleic Acids Res., 2017)

IMG/VR: a database of cultured and uncultured DNA Viruses and retroviruses. - David Páez-Espino; I-Min A. Chen; Krishna Palaniappan; Anna Ratner; Ken Chu; Ernest Szeto; Manoj Pillay; Jinghua Huang; Victor M. Markowitz; Torben Nielsen; Marcel Huntemann; T. B. K. Reddy; et al. (Nucleic Acids Res., 2017)

IMG/M v.5.0: an integrated data management and comparative analysis system for microbial genomes and microbiomes. - I-Min A. Chen; Ken Chu; Krishna Palaniappan; Manoj Pillay; Anna Ratner; Jinghua Huang; Marcel Huntemann; Neha Varghese; James R. White; Rekha Seshadri; Tatyana Smirnova; Edward Kirton; et al. (Nucleic Acids Res., 2019)

Genomes OnLine database (GOLD) v.7: updates and new features. - Supratim Mukherjee; Dimitri Stamatis; Jon Bertsch; Galina Ovchinnikova; Hema Y. Katta; Alejandro Mojica; I-Min A. Chen; Nikos Kyrpides; T. B. K. Reddy (Nucleic Acids Res., 2019)

IMG/VR v.2.0: an integrated data management and analysis system for cultivated and environmental viral genomes. - David Páez-Espino; Simon Roux; I-Min A. Chen; Krishna Palaniappan; Anna Ratner; Ken Chu; Marcel Huntemann; T. B. K. Reddy; Joan Carles Pons; Mercè Llabrés; Emiley A. Eloe-Fadrosh; Natalia N. Ivanova; et al. (Nucleic Acids Res., 2019)

IMG-ABC v.5.0: an update to the IMG/Atlas of Biosynthetic Gene Clusters Knowledgebase. - Krishnaveni Palaniappan; I-Min A. Chen; Ken Chu; Anna Ratner; Rekha Seshadri; Nikos Kyrpides; Natalia N. Ivanova; Nigel J. Mouncey (Nucleic Acids Res., 2020)

The IMG/M data management and analysis system v.6.0: new tools and advanced capabilities. - I-Min A. Chen; Ken Chu; Krishnaveni Palaniappan; Anna Ratner; Jinghua Huang; Marcel Huntemann; Patrick Hajek; Stephan Ritter; Neha Varghese; Rekha Seshadri; Simon Roux; Tanja Woyke; et al. (Nucleic Acids Res., 2021)

Genomes OnLine Database (GOLD) v.8: overview and updates. - Supratim Mukherjee; Dimitri Stamatis; Jon Bertsch; Galina Ovchinnikova; Jagadish Chandrabose Sundaramurthi; Janey Lee; Mahathi Kandimalla; I-Min A. Chen; Nikos Kyrpides; T. B. K. Reddy (Nucleic Acids Res., 2021)

IMG/VR v3: an integrated ecological and evolutionary framework for interrogating genomes of uncultivated viruses. - Simon Roux; David Páez-Espino; I-Min A. Chen; Krishna Palaniappan; Anna Ratner; Ken Chu; T. B. K. Reddy; Stephen Nayfach; Frederik Schulz; Lee Call; Russell Y. Neches; Tanja Woyke; et al. (Nucleic Acids Res., 2021)

Standardized naming of microbiome samples in Genomes OnLine Database. - Supratim Mukherjee; Galina Ovchinnikova; Dimitri Stamatis; Cindy Tianqing Li; I-Min A. Chen; Nikos Kyrpides; T. B. K. Reddy (Database J. Biol. Databases Curation, 2023)

IMG/VR v4: an expanded database of uncultivated virus genomes within a framework of extensive functional, taxonomic, and ecological metadata. - Antonio Pedro Camargo; Stephen Nayfach; I-Min A. Chen; Krishnaveni Palaniappan; Anna Ratner; Ken Chu; Stephan Ritter; T. B. K. Reddy; Supratim Mukherjee; Frederik Schulz; Lee Call; Russell Y. Neches; et al. (Nucleic Acids Res., 2023)

The IMG/M data management and analysis system v.7: content updates and new features. - I-Min A. Chen; Ken Chu; Krishnaveni Palaniappan; Anna Ratner; Jinghua Huang; Marcel Huntemann; Patrick Hajek; Stephan Ritter; Cody Webb; Dongying Wu; Neha Varghese; T. B. K. Reddy; et al. (Nucleic Acids Res., 2023)

Twenty-five years of Genomes OnLine Database (GOLD): data updates and new features in v.9. - Supratim Mukherjee; Dimitri Stamatis; Cindy Tianqing Li; Galina Ovchinnikova; Jon Bertsch; Jagadish Chandrabose Sundaramurthi; Mahathi Kandimalla; Paul A. Nicolopoulos; Alessandro Favognano; I-Min A. Chen; Nikos Kyrpides; T. B. K. Reddy (Nucleic Acids Res., 2023)