Mitochondrial Variability as a Source of Extrinsic Cellular Noise. - Iain G. Johnston; Bernadett Gaal; Ricardo Pires das Neves; Tariq Enver; Francisco J. Iborra; Nick S. Jones (PLoS Comput. Biol., 2012)

Precision identification of high-risk phenotypes and progression pathways in severe malaria without requiring longitudinal data. - Iain G. Johnston; Till Hoffmann; Sam F. Greenbury; Ornella Cominetti; Muminatou Jallow; Dominic Kwiatkowski; Mauricio Barahona; Nick S. Jones; Climent Casals-Pascual (npj Digit. Medicine, 2019)

Energetic costs of cellular and therapeutic control of stochastic mitochondrial DNA populations. - Hanne Hoitzing; Payam A. Gammage; Lindsey Van Haute; Michal Minczuk; Iain G. Johnston; Nick S. Jones (PLoS Comput. Biol., 2019)

Data-driven modelling and characterisation of task completion sequences in online courses. - Robert L. Peach; Sam F. Greenbury; Iain G. Johnston; Sophia N. Yaliraki; David Lefevre; Mauricio Barahona (CoRR, 2020)

Optimal strategies in the fighting fantasy gaming system: Influencing stochastic dynamics by gambling with limited resource. - Iain G. Johnston (Eur. J. Oper. Res., 2022)

HyperHMM: efficient inference of evolutionary and progressive dynamics on hypercubic transition graphs. - Marcus T. Moen; Iain G. Johnston (Bioinform., 2023)

Mitochondrial network structure controls cell-to-cell mtDNA variability generated by cell divisions. - Robert C. Glastad; Iain G. Johnston (PLoS Comput. Biol., 2023)

Comparing Structure and Dynamics of Transition Graphs by the Symmetric Difference Metric Over an Edge-Filtration. - Belén García Pascual; Lars M. Salbu; Jessica Renz; Konstantinos Giannakis; Iain G. Johnston (IEEE Access, 2024)

HyperTraPS-CT: Inference and prediction for accumulation pathways with flexible data and model structures. - Olav N. L. Aga; Morten Brun; Kazeem Adesina Dauda; Ramón Díaz-Uriarte; Konstantinos Giannakis; Iain G. Johnston (PLoS Comput. Biol., 2024)

Clustering Large-Scale Biomedical Data to Model Dynamic Accumulation Processes in Disease Progression and Anti-Microbial Resistance Evolution. - Kazeem Adesina Dauda; Olav N. L. Aga; Iain G. Johnston (IEEE Access, 2025)

A Picture Guide to Cancer Progression and Evolutionary Accumulation Models: Systematic Critique, Plausible Interpretations, and Alternative Uses. - Ramón Díaz-Uriarte; Iain G. Johnston (IEEE Access, 2025)