Progress and challenges in predicting protein-protein interaction sites. - Iakes Ezkurdia; Lisa Bartoli; Piero Fariselli; Rita Casadio; Alfonso Valencia; Michael L. Tress (Briefings Bioinform., 2009)

EcID. A database for the inference of functional interactions in E. coli. - Eduardo Andrés León; Iakes Ezkurdia; Beatriz García Jiménez; Alfonso Valencia; David de Juan (Nucleic Acids Res., 2009)

APPRIS: annotation of principal and alternative splice isoforms. - José Manuel Rodriguez; Paolo Maietta; Iakes Ezkurdia; Alessandro Pietrelli; Jan-Jaap Wesselink; Gonzalo López; Alfonso Valencia; Michael L. Tress (Nucleic Acids Res., 2013)

Alternatively Spliced Homologous Exons Have Ancient Origins and Are Highly Expressed at the Protein Level. - Federico Abascal; Iakes Ezkurdia; Juan Rodriguez-Rivas; José Manuel Rodriguez; Angela del Pozo; Jesús Vázquez; Alfonso Valencia; Michael L. Tress (PLoS Comput. Biol., 2015)

SanXoT: a modular and versatile package for the quantitative analysis of high-throughput proteomics experiments. - Marco Trevisan-Herraz; Navratan Bagwan; Fernando García-Marqués; José Manuel Rodriguez; Inmaculada Jorge; Iakes Ezkurdia; Elena Bonzon-Kulichenko; Jesús Vázquez (Bioinform., 2019)