Functional Alignment of Regulatory Networks: A Study of Temperate Phages. - Ala Trusina; Kim Sneppen; Ian B. Dodd; Keith E. Shearwin; J. Barry Egan (PLoS Comput. Biol., 2005)

The Generation of Promoter-Mediated Transcriptional Noise in Bacteria. - Namiko Mitarai; Ian B. Dodd; Michael T. Crooks; Kim Sneppen (PLoS Comput. Biol., 2008)

A Simple Histone Code Opens Many Paths to Epigenetics. - Kim Sneppen; Ian B. Dodd (PLoS Comput. Biol., 2012)