A Manifold Learning Based Approach to Reveal the Functional Linkages across Multiple Gene Networks. - Nam D. Nguyen; Ian Blaby; Daifeng Wang (BCB, 2018)

Extracting Protein-Protein Interactions (PPIs) from Biomedical Literature using Attention-based Relational Context Information. - Gilchan Park; Sean McCorkle; Carlos Soto 003; Ian Blaby; Shinjae Yoo (IEEE Big Data, 2022)

A roadmap for the functional annotation of protein families: a community perspective. - Valérie de Crécy-Lagard; Rocio Amorin de Hegedus; Cecilia N. Arighi; Jill Babor; Alex Bateman; Ian Blaby; Crysten Blaby-Haas; Alan J. Bridge; Stephen K. Burley; Stacey Cleveland; Lucy J. Colwell; Ana Conesa; et al. (Database J. Biol. Databases Curation, 2022)

Sensitivity Analysis of Genome-Scale Metabolic Flux Prediction. - Puhua Niu; Maria J. Soto; Shuai Huang 001; Byung-Jun Yoon; Edward R. Dougherty; Francis J. Alexander; Ian Blaby; Xiaoning Qian (J. Comput. Biol., 2023)