Assigning genomic sequences to CATH. - Frances M. G. Pearl; David A. Lee; James E. Bray; Ian Sillitoe; Annabel E. Todd; Andrew P. Harrison; Janet M. Thornton; Christine A. Orengo (Nucleic Acids Res., 2000)

A rapid classification protocol for the CATH Domain Database to support structural genomics. - Frances M. G. Pearl; Nigel J. Martin 001; James E. Bray; Daniel W. A. Buchan; Andrew P. Harrison; David A. Lee; Gabrielle A. Reeves; Adrian J. Shepherd; Ian Sillitoe; Annabel E. Todd; Janet M. Thornton; Christine A. Orengo (Nucleic Acids Res., 2001)

Recognizing the fold of a protein structure. - Andrew P. Harrison; Frances M. G. Pearl; Ian Sillitoe; Tim Slidel; Richard Mott; Janet M. Thornton; Christine A. Orengo (Bioinform., 2003)

The CATH database: an extended protein family resource for structural and functional genomics. - Frances M. G. Pearl; C. F. Bennett; James E. Bray; Andrew P. Harrison; Nigel J. Martin 001; Adrian J. Shepherd; Ian Sillitoe; Janet M. Thornton; Christine A. Orengo (Nucleic Acids Res., 2003)

A structural perspective on genome evolution. - David A. Lee; Alastair Grant; Ian Sillitoe; Mark Dibley; Juan Garcia Ranea; Christine A. Orengo (RECOMB, 2004)

The CATH Domain Structure Database and related resources Gene3D and DHS provide comprehensive domain family information for genome analysis. - Frances M. G. Pearl; Annabel E. Todd; Ian Sillitoe; Mark Dibley; Oliver Redfern; Tony E. Lewis; Christopher Bennett; Russell L. Marsden; Alastair Grant; David A. Lee; Adrian Akpor; Michael Maibaum; et al. (Nucleic Acids Res., 2005)

The CATH domain structure database: new protocols and classification levels give a more comprehensive resource for exploring evolution. - Lesley H. Greene; Tony E. Lewis; Sarah Addou; Alison L. Cuff; Timothy Dallman; Mark Dibley; Oliver Redfern; Frances M. G. Pearl; Rekha Nambudiry; Adam James Reid; Ian Sillitoe; Corin Yeats; et al. (Nucleic Acids Res., 2007)

The CATH classification revisited - architectures reviewed and new ways to characterize structural divergence in superfamilies. - Alison L. Cuff; Ian Sillitoe; Tony E. Lewis; Oliver Redfern; Richard Garratt; Janet M. Thornton; Christine A. Orengo (Nucleic Acids Res., 2009)

FLORA: A Novel Method to Predict Protein Function from Structure in Diverse Superfamilies. - Oliver Redfern; Benoit H. Dessailly; Timothy Dallman; Ian Sillitoe; Christine A. Orengo (PLoS Comput. Biol., 2009)

Extending CATH: increasing coverage of the protein structure universe and linking structure with function. - Alison L. Cuff; Ian Sillitoe; Tony E. Lewis; Andrew B. Clegg; Robert Rentzsch; Nicholas Furnham; Marialuisa Pellegrini-Calace; David T. Jones; Janet M. Thornton; Christine A. Orengo (Nucleic Acids Res., 2011)

The Gene3D Web Services: a platform for identifying, annotating and comparing structural domains in protein sequences. - Corin Yeats; Jonathan G. Lees; Phil Carter; Ian Sillitoe; Christine A. Orengo (Nucleic Acids Res., 2011)

FunTree: a resource for exploring the functional evolution of structurally defined enzyme superfamilies. - Nicholas Furnham; Ian Sillitoe; Gemma L. Holliday; Alison L. Cuff; Syed Asad Rahman; Roman A. Laskowski; Christine A. Orengo; Janet M. Thornton (Nucleic Acids Res., 2012)

Gene3D: a domain-based resource for comparative genomics, functional annotation and protein network analysis. - Jonathan G. Lees; Corin Yeats; James Richard Perkins; Ian Sillitoe; Robert Rentzsch; Benoit H. Dessailly; Christine A. Orengo (Nucleic Acids Res., 2012)

Exploring the Evolution of Novel Enzyme Functions within Structurally Defined Protein Superfamilies. - Nicholas Furnham; Ian Sillitoe; Gemma L. Holliday; Alison L. Cuff; Roman A. Laskowski; Christine A. Orengo; Janet M. Thornton (PLoS Comput. Biol., 2012)

Genome3D: a UK collaborative project to annotate genomic sequences with predicted 3D structures based on SCOP and CATH domains. - Tony E. Lewis; Ian Sillitoe; Antonina Andreeva; Tom L. Blundell; Daniel W. A. Buchan; Cyrus Chothia; Alison L. Cuff; Jose M. Dana; Ioannis Filippis; Julian Gough; Sarah Hunter; David T. Jones; et al. (Nucleic Acids Res., 2013)

New functional families (FunFams) in CATH to improve the mapping of conserved functional sites to 3D structures. - Ian Sillitoe; Alison L. Cuff; Benoit H. Dessailly; Natalie L. Dawson; Nicholas Furnham; David A. Lee; Jonathan G. Lees; Tony E. Lewis; Romain A. Studer; Robert Rentzsch; Corin Yeats; Janet M. Thornton; et al. (Nucleic Acids Res., 2013)

BioJS: an open source standard for biological visualisation - its status in 2014. - Manuel Corpas; Rafael C. Jiménez; Seth Carbon; Alexander García Castro; Leyla Jael Castro; Tatyana Goldberg; John Gómez; Alex Kalderimis; Suzanna E. Lewis; Ian Mulvany; Aleksandra Pawlik; Francis Rowland; et al. (F1000Research, 2014)

Gene3D: Multi-domain annotations for protein sequence and comparative genome analysis. - Jonathan G. Lees; David A. Lee; Romain A. Studer; Natalie L. Dawson; Ian Sillitoe; Sayoni Das; Corin Yeats; Benoit H. Dessailly; Robert Rentzsch; Christine A. Orengo (Nucleic Acids Res., 2014)

Functional classification of CATH superfamilies: a domain-based approach for protein function annotation. - Sayoni Das; David A. Lee; Ian Sillitoe; Natalie L. Dawson; Jonathan G. Lees; Christine A. Orengo (Bioinform., 2015)

CATH FunFHMMer web server: protein functional annotations using functional family assignments. - Sayoni Das; Ian Sillitoe; David A. Lee; Jonathan G. Lees; Natalie L. Dawson; John Ward; Christine A. Orengo (Nucleic Acids Res., 2015)

Genome3D: exploiting structure to help users understand their sequences. - Tony E. Lewis; Ian Sillitoe; Antonina Andreeva; Tom L. Blundell; Daniel W. A. Buchan; Cyrus Chothia; Domenico Cozzetto; Jose M. Dana; Ioannis Filippis; Julian Gough; David T. Jones; Lawrence A. Kelley; et al. (Nucleic Acids Res., 2015)

The InterPro protein families database: the classification resource after 15 years. - Alex L. Mitchell; Hsin-Yu Chang; Louise C. Daugherty; Matthew Fraser; Sarah Hunter; Rodrigo Lopez; Craig McAnulla; Conor McMenamin; Gift Nuka; Sebastien Pesseat; Amaia Sangrador-Vegas; Maxim Scheremetjew; et al. (Nucleic Acids Res., 2015)

CATH: comprehensive structural and functional annotations for genome sequences. - Ian Sillitoe; Tony E. Lewis; Alison L. Cuff; Sayoni Das; Paul Ashford; Natalie L. Dawson; Nicholas Furnham; Roman A. Laskowski; David A. Lee; Jonathan G. Lees; Sonja Lehtinen; Romain A. Studer; et al. (Nucleic Acids Res., 2015)

MSAViewer: interactive JavaScript visualization of multiple sequence alignments. - Guy Yachdav; Sebastian Wilzbach; Benedikt Rauscher; Robert Sheridan; Ian Sillitoe; James B. Procter; Suzanna E. Lewis; Burkhard Rost; Tatyana Goldberg (Bioinform., 2016)

Gene3D: expanding the utility of domain assignments. - Su Datt Lam; Natalie L. Dawson; Sayoni Das; Ian Sillitoe; Paul Ashford; David A. Lee; Sonja Lehtinen; Christine A. Orengo; Jonathan G. Lees (Nucleic Acids Res., 2016)

FunTree: advances in a resource for exploring and contextualising protein function evolution. - Ian Sillitoe; Nicholas Furnham (Nucleic Acids Res., 2016)

CATH: an expanded resource to predict protein function through structure and sequence. - Natalie L. Dawson; Tony E. Lewis; Sayoni Das; Jonathan G. Lees; David A. Lee; Paul Ashford; Christine A. Orengo; Ian Sillitoe (Nucleic Acids Res., 2017)

InterPro in 2017 - beyond protein family and domain annotations. - Robert D. Finn; Teresa K. Attwood; Patricia C. Babbitt; Alex Bateman; Peer Bork; Alan J. Bridge; Hsin-Yu Chang; Zsuzsanna Dosztányi; Sara El-Gebali; Matthew Fraser; Julian Gough; David Haft; et al. (Nucleic Acids Res., 2017)

Gene3D: Extensive prediction of globular domains in proteins. - Tony E. Lewis; Ian Sillitoe; Natalie L. Dawson; Su Datt Lam; Tristan Clarke; David A. Lee; Christine A. Orengo; Jonathan G. Lees (Nucleic Acids Res., 2018)

Associating Protein Domains with Biological Functions: A Tripartite Network Approach. - Elena Rojano; James Richard Perkins; Ian Sillitoe; Christine A. Orengo; Juan Antonio Garcia-Ranea; Pedro Seoane (IWBBIO (2), 2019)

cath-resolve-hits: a new tool that resolves domain matches suspiciously quickly. - Tony E. Lewis; Ian Sillitoe; Jonathan G. Lees (Bioinform., 2019)

InterPro in 2019: improving coverage, classification and access to protein sequence annotations. - Alex L. Mitchell; Teresa K. Attwood; Patricia C. Babbitt; Matthias Blum; Peer Bork; Alan J. Bridge; Shoshana D. Brown; Hsin-Yu Chang; Sara El-Gebali; Matthew Fraser; Julian Gough; David Haft; et al. (Nucleic Acids Res., 2019)

CATH: expanding the horizons of structure-based functional annotations for genome sequences. - Ian Sillitoe; Natalie L. Dawson; Tony E. Lewis; Sayoni Das; Jonathan G. Lees; Paul Ashford; Adeyelu Tolulope; Harry M. Scholes; Ilya Senatorov; Andra Bujan; Fatima Ceballos Rodriguez-Conde; Benjamin Dowling; et al. (Nucleic Acids Res., 2019)

The ELIXIR Core Data Resources: fundamental infrastructure for the life sciences. - Rachel Drysdale; Charles E. Cook; Robert Petryszak; Vivienne Baillie Gerritsen; Mary Barlow; Elisabeth Gasteiger; Franziska Gruhl; Jürgen Haas; Jerry Lanfear; Rodrigo Lopez; Nicole Redaschi; Heinz Stockinger; et al. (Bioinform., 2020)

Genome3D: integrating a collaborative data pipeline to expand the depth and breadth of consensus protein structure annotation. - Ian Sillitoe; Antonina Andreeva; Tom L. Blundell; Daniel W. A. Buchan; Robert D. Finn; Julian Gough; David T. Jones; Lawrence A. Kelley; Typhaine Paysan-Lafosse; Su Datt Lam; Alexey G. Murzin; Arun Prasad Pandurangan; et al. (Nucleic Acids Res., 2020)

PDBe-KB: a community-driven resource for structural and functional annotations. - Mihaly Varadi; John M. Berrisford; Mandar S. Deshpande; Sreenath Nair; Aleksandras Gutmanas; David R. Armstrong; Lukás Pravda; Bissan Al-Lazikani; Stephen Anyango; Geoffrey J. Barton; Karel Berka; Tom L. Blundell; et al. (Nucleic Acids Res., 2020)

The InterPro protein families and domains database: 20 years on. - Matthias Blum; Hsin-Yu Chang; Sara Chuguransky; Tiago Grego; Swaathi Kandasamy; Alex L. Mitchell; Gift Nuka; Typhaine Paysan-Lafosse; Matloob Qureshi; Shriya Raj; Lorna J. Richardson; Gustavo A. Salazar; et al. (Nucleic Acids Res., 2021)

CATH: increased structural coverage of functional space. - Ian Sillitoe; Nicola Bordin; Natalie L. Dawson; Vaishali P. Waman; Paul Ashford; Harry M. Scholes; Camilla S. M. Pang; Laurel Woodridge; Clemens Rauer; Neeladri Sen; Mahnaz Abbasian; Sean Le Cornu; et al. (Nucleic Acids Res., 2021)

Characterizing and explaining the impact of disease-associated mutations in proteins without known structures or structural homologs. - Neeladri Sen; Ivan Anishchenko; Nicola Bordin; Ian Sillitoe; Sameer Velankar; David Baker 001; Christine A. Orengo (Briefings Bioinform., 2022)

Assigning protein function from domain-function associations using DomFun. - Elena Rojano; Fernando Moreno Jabato; James Richard Perkins; José Córdoba-Caballero; Federico García-Criado; Ian Sillitoe; Christine A. Orengo; Juan A. G. Ranea; Pedro Seoane-Zonjic (BMC Bioinform., 2022)

Dissecting peripheral protein-membrane interfaces. - Thibault Tubiana; Ian Sillitoe; Christine A. Orengo; Nathalie Reuter (PLoS Comput. Biol., 2022)

CATHe: detection of remote homologues for CATH superfamilies using embeddings from protein language models. - Vamsi Nallapareddy; Nicola Bordin; Ian Sillitoe; Michael Heinzinger; Maria Littmann; Vaishali P. Waman; Neeladri Sen; Burkhard Rost; Christine A. Orengo (Bioinform., 2023)

InterPro in 2022. - Typhaine Paysan-Lafosse; Matthias Blum; Sara Chuguransky; Tiago Grego; Beatriz Lázaro Pinto; Gustavo A. Salazar; Maxwell L. Bileschi; Peer Bork; Alan J. Bridge; Lucy J. Colwell; Julian Gough; Daniel H. Haft; et al. (Nucleic Acids Res., 2023)