Comparative Annotation Toolkit (CAT) - Simultaneous Clade and Personal Genome Annotation. - Ian T. Fiddes (2017)

The UCSC Genome Browser database: 2018 update. - Jonathan Casper; Ann S. Zweig; Chris Villarreal; Cath Tyner; Matthew L. Speir; Kate R. Rosenbloom; Brian J. Raney; Christopher M. Lee; Brian T. Lee; Donna Karolchik; Angie S. Hinrichs; Maximilian Haeussler; et al. (Nucleic Acids Res., 2018)

GENCODE reference annotation for the human and mouse genomes. - Adam Frankish; Mark Diekhans; Anne-Maud Ferreira; Rory Johnson; Irwin Jungreis; Jane E. Loveland; Jonathan M. Mudge; Cristina Sisu; James C. Wright; Joel Armstrong; If Barnes; Andrew E. Berry; et al. (Nucleic Acids Res., 2019)

scHLAcount: allele-specific HLA expression from single-cell gene expression data. - Charlotte A. Darby; Michael J. T. Stubbington; Patrick J. Marks; Álvaro Martínez Barrio; Ian T. Fiddes (Bioinform., 2020)

GENCODE 2021. - Adam Frankish; Mark Diekhans; Irwin Jungreis; Julien Lagarde; Jane E. Loveland; Jonathan M. Mudge; Cristina Sisu; James C. Wright; Joel Armstrong; If Barnes; Andrew E. Berry; Alexandra Bignell; et al. (Nucleic Acids Res., 2021)