Sparsification Enables Predicting Kissing Hairpin Pseudoknot Structures of Long RNAs in Practice. - Hosna Jabbari; Ian Wark; Carlo Montemagno; Sebastian Will (WABI, 2017)

Knotty: efficient and accurate prediction of complex RNA pseudoknot structures. - Hosna Jabbari; Ian Wark; Carlo Montemagno; Sebastian Will (Bioinform., 2018)

Shapify: Paths to SARS-CoV-2 frameshifting pseudoknot. - Luke Trinity; Ian Wark; Lance Lansing; Hosna Jabbari; Ulrike Stege (PLoS Comput. Biol., 2023)