Automatic extraction of gene ontology annotation and its correlation with clusters in protein networks. - Nikolai Daraselia; Anton Yuryev; Sergei Egorov; Ilya Mazo; Iaroslav Ispolatov (BMC Bioinform., 2007)

Detection of the dominant direction of information flow and feedback links in densely interconnected regulatory networks. - Iaroslav Ispolatov; Sergei Maslov (BMC Bioinform., 2008)

A Model for the Self-Organization of Vesicular Flux and Protein Distributions in the Golgi Apparatus. - Iaroslav Ispolatov; Anne Müsch (PLoS Comput. Biol., 2013)

Optimal number of spacers in CRISPR arrays. - Alexander Martynov; Konstantin Severinov; Iaroslav Ispolatov (PLoS Comput. Biol., 2017)

Competition-driven evolution of organismal complexity. - Iaroslav Ispolatov; Evgeniia Alekseeva; Michael Doebeli (PLoS Comput. Biol., 2019)

Evolution to alternative levels of stable diversity leaves areas of niche space unexplored. - Ilan N. Rubin; Iaroslav Ispolatov; Michael Doebeli (PLoS Comput. Biol., 2021)