4Cin: A computational pipeline for 3D genome modeling and virtual Hi-C analyses from 4C data. - Ibai Irastorza-Azcarate; Rafael D. Acemel; Juan J. Tena; Ignacio Maeso; José Luis Gómez-Skarmeta; Damien P. Devos (PLoS Comput. Biol., 2018)

GAMIBHEAR: whole-genome haplotype reconstruction from Genome Architecture Mapping data. - Julia Markowski; Rieke Kempfer; Alexander Kukalev; Ibai Irastorza-Azcarate; Gesa Loof; Birte Kehr; Ana Pombo; Sven Rahmann; Roland F. Schwarz (Bioinform., 2021)