Automatic Design of DNA Logic Gates Based on Kinetic Simulation. - Ibuki Kawamata; Fumiaki Tanaka; Masami Hagiya (DNA, 2009)

IT for synthetic biology and DNA nanotechnology. - Masami Hagiya; Fumiaki Tanaka; Ibuki Kawamata (XRDS, 2010)

Abstraction of Graph-Based Models of Bio-molecular Reaction Systems for Efficient Simulation. - Ibuki Kawamata; Nathanael Aubert; Masahiro Hamano; Masami Hagiya (CMSB, 2012)

On DNA-Based Gellular Automata. - Masami Hagiya; Shaoyu Wang; Ibuki Kawamata; Satoshi Murata; Teijiro Isokawa; Ferdinand Peper; Katsunobu Imai (UCNC, 2014)

Pattern Formation and Computation by Autonomous Chemical Reaction Diffusion Model Inspired by Cellular Automata. - Ibuki Kawamata; Takuto Hosoya; Fumi Takabatake; Ken Sugawara; Shin-ichiro M. Nomura; Teijiro Isokawa; Ferdinand Peper; Masami Hagiya; Satoshi Murata (CANDAR, 2016)

Universal Totalistic Asynchonous Cellular Automaton and Its Possible Implementation by DNA. - Teijiro Isokawa; Ferdinand Peper; Ibuki Kawamata; Nobuyuki Matsui; Satoshi Murata; Masami Hagiya (UCNC, 2016)

Discrete DNA Reaction-Diffusion Model for Implementing Simple Cellular Automaton. - Ibuki Kawamata; Satoru Yoshizawa; Fumi Takabatake; Ken Sugawara; Satoshi Murata (UCNC, 2016)

Evolutionary optimization of self-assembly in a swarm of bio-micro-robots. - Nathanaël Aubert-Kato; Charles Fosseprez; Guillaume Gines; Ibuki Kawamata; Quang Huy Dinh; Leo Cazenille; Andre Estevez-Torres; Masami Hagiya; Yannick Rondelez; Nicolas Bredèche (GECCO, 2017)

Non natural tiny-wet machine: Molecular robot. - Yusuke Sato; Yuichi Hiratsuka; Ibuki Kawamata; Satoshi Murata; Shin-ichiro M. Nomura (MHS, 2017)

Discretization of Chemical Reactions in a Periodic Cellular Space. - Fumi Takabatake; Ibuki Kawamata; Ken Sugawara; Satoshi Murata (New Gener. Comput., 2017)

Micrometer-sized molecular robot changes its shape in response to signal molecules. - Yuichi Hiratsuka; Ibuki Kawamata; Satoshi Murata; Shin-ichiro M. Nomura (Sci. Robotics, 2017)

Pattern Formation on Discrete Gel Matrix Based on DNA Computing. - Takuto Hosoya; Ibuki Kawamata; Shin-ichiro M. Nomura; Satoshi Murata (New Gener. Comput., 2019)

Design Automation of Polyomino Set That Self-Assembles into a Desired Shape. - Yuta Matsumura; Ibuki Kawamata; Satoshi Murata (DNA, 2020)

Turing-completeness of asynchronous non-camouflage cellular automata. - Tatsuya Yamashita; Teijiro Isokawa; Ferdinand Peper; Ibuki Kawamata; Masami Hagiya (Inf. Comput., 2020)

Self-replication and Mutation of Polymeric Molecules Simulated by Simplified Chemistry. - Taisei Mori; Ibuki Kawamata; Satoshi Murata (CANDARW, 2022)

Autonomous and Programmable Strand Generator Implemented as DNA and Enzymatic Chemical Reaction Cascade. - Ibuki Kawamata; Shin-ichiro M. Nomura; Satoshi Murata (New Gener. Comput., 2022)