ChaMeleons-01 Team Description. - Paul Carpenter 001; Patrick Riley 001; Gal A. Kaminka; Manuela M. Veloso; Ignacio Thayer; Robert Wang (RoboCup, 2001)

Comparing Best-First Search and Dynamic Programming for Optimal Multiple Sequence Alignment. - Heath Hohwald; Ignacio Thayer; Richard E. Korf (IJCAI, 2003)

The ISI/USC MT system. - Ignacio Thayer; Emil Ettelaie; Kevin Knight; Daniel Marcu; Dragos Stefan Munteanu; Franz Josef Och; Quamrul Tipu (IWSLT, 2004)

Frontier search. - Richard E. Korf; Weixiong Zhang; Ignacio Thayer; Heath Hohwald (J. ACM, 2005)

Scalable Inference and Training of Context-Rich Syntactic Translation Models. - Michel Galley; Jonathan Graehl; Kevin Knight; Daniel Marcu; Steve DeNeefe; Wei Wang 006; Ignacio Thayer (ACL, 2006)

Lattice-based Minimum Error Rate Training for Statistical Machine Translation. - Wolfgang Macherey; Franz Josef Och; Ignacio Thayer; Jakob Uszkoreit (EMNLP, 2008)