Small changes in free energy assignments for unpaired bases do not affect predicted secondary structures in single stranded RNA. - Ruth Nussinov; Ignacio Tinoco Jr.; A. B. Jacobson (Nucleic Acids Res., 1982)

Secondary structure model for the complete simian virus 50 late precursor mRNA. - Ruth Nussinov; Ignacio Tinoco Jr.; A. B. Jacobson (Nucleic Acids Res., 1982)

Base-base mismatches. Thermodynamics of double helix formation for dCA3XA3G + dCT3YT3G (X, Y = A, C, G, T). - F. Aboul-ela; D. Koh; Ignacio Tinoco Jr.; F. H. Martin (Nucleic Acids Res., 1985)

Evidence for Z-form RNA by vacuum UV circular dichroism. - Jeannine H. Riazance; Walter A. Baase; W. Curtis Johnson Jr.; Kathleen Hall; Phillip Cruz; Ignacio Tinoco Jr. (Nucleic Acids Res., 1985)

A dynamic programming algorithm for finding alternative RNA secondary structures. - A. L. Williams Jr.; Ignacio Tinoco Jr. (Nucleic Acids Res., 1986)

Dna Dynamics in Aqueous Solution: Opening the Double Helix. - Andrew Pohorille; Wilson S. Ross; Ignacio Tinoco Jr. (Int. J. High Perform. Comput. Appl., 1990)

A proton NMR study of a DNA dumb-bell structure with hairpin loops of only two nucleotides: d(CACGTGTGTGCGTGCA). - Lambertus J. Rinkel; Ignacio Tinoco Jr. (Nucleic Acids Res., 1991)