A Statistical Approach to Solving the EBL Utility Problem. - Russell Greiner; Igor Jurisica (AAAI, 1992)

Case-Based Classification Using Similarity-Based Retrieval. - Igor Jurisica; Janice I. Glasgow (ICTAI, 1996)

Similarity-based retrieval for diverse bookshelf software repository users. - Igor Jurisica (CASCON, 1997)

Improving Performance of Case-Based Classification Using Context-Based Relevance. - Igor Jurisica; Janice I. Glasgow (Int. J. Artif. Intell. Tools, 1997)

Building Quality into Case-Based Reasoning Systems. - Igor Jurisica; Brian A. Nixon (CAiSE, 1998)

An Efficient Approach to Iterative Browsing and Retrieval for Case-Based Reasoning. - Igor Jurisica; Janice I. Glasgow (IEA/AIE (Vol. 2), 1998)

Reverse Engineering by Mining Dynamic Repositories. - Homayoun Dayani-Fard; Igor Jurisica (WCRE, 1998)

Case-based reasoning in IVF: prediction and knowledge mining. - Igor Jurisica; John Mylopoulos; Janice I. Glasgow; Heather Shapiro; Robert F. Casper (Artif. Intell. Medicine, 1998)

TA3: theory, implementation, and applications of similarity-based retrieval for case-based reasoning. - Igor Jurisica (1998)

Knowledge discovery in biological domains (tutorial AM-3). - Aris Floratos; Igor Jurisica; Isidore Rigoutsos (KDD Tutorial Notes, 2000)

Extending Case-Based Reasoning by Discovering and Using Image Features in IVF. - Igor Jurisica; Janice I. Glasgow (SAC (1), 2000)

Incremental Iterative Retrieval and Browsing for Efficient Conversational CBR Systems. - Igor Jurisica; Janice I. Glasgow; John Mylopoulos (Appl. Intell., 2000)

Image-Feature Extraction for Protein Crystallization: Integrating Image Analysis and Case-Based Reasoning. - Igor Jurisica; Phil Rogers; Janice I. Glasgow; Suzanne Fortier; Joseph R. Luft; Melissa A. Bianca; Robert J. Collins; George T. DeTitta (IAAI, 2001)

Improving Objectivity and Scalability in Protein Crystallization: Integrating Image Analysis With Knowledge Discovery. - Igor Jurisica; Patrick Rogers; Janice I. Glasgow; Robert J. Collins; Jennifer R. Wolfley; Joseph R. Luft; George T. DeTitta (IEEE Intell. Syst., 2001)

Intelligent decision support for protein crystal growth. - Igor Jurisica; Patrick Rogers; Janice I. Glasgow; Suzanne Fortier; Joseph R. Luft; Jennifer R. Wolfley; Melissa A. Bianca; Daniel R. Weeks; George T. DeTitta (IBM Syst. J., 2001)

Binary tree-structured vector quantization approach to clustering and visualizing microarray data. - Mujahid Sultan; Dennis A. Wigle; Christian A. Cumbaa; Marlena Maziarz; Janice I. Glasgow; Ming-Sound Tsao; Igor Jurisica (ISMB, 2002)

Maintaining Case-Based Reasoning Systems: A Machine Learning Approach. - Niloofar Arshadi; Igor Jurisica (ECCBR, 2004)

AI and Bioinformatics. - Janice I. Glasgow; Igor Jurisica; Burkhard Rost (AI Mag., 2004)

Applications of Case-Based Reasoning in Molecular Biology. - Igor Jurisica; Janice I. Glasgow (AI Mag., 2004)

Protein complex prediction via cost-based clustering. - Andrew D. King; Natasa Przulj; Igor Jurisica (Bioinform., 2004)

Modeling interactome: scale-free or geometric?. - Natasa Przulj; Derek G. Corneil; Igor Jurisica (Bioinform., 2004)

Functional topology in a network of protein interactions. - Natasa Przulj; Dennis A. Wigle; Igor Jurisica (Bioinform., 2004)

Ontologies for Knowledge Management: An Information Systems Perspective. - Igor Jurisica; John Mylopoulos; Eric S. K. Yu (Knowl. Inf. Syst., 2004)

Scheduling functional regression tests for IBM DB2 products. - Edward Xia; Igor Jurisica; Julie Waterhouse; Valerie Sloan (CASCON, 2005)

Feature Selection for Improving Case-Based Classifiers on High-Dimensional Data Sets. - Niloofar Arshadi; Igor Jurisica (FLAIRS, 2005)

An Ensemble of Case-Based Classifiers for High-Dimensional Biological Domains. - Niloofar Arshadi; Igor Jurisica (ICCBR, 2005)

Online Predicted Human Interaction Database. - Kevin R. Brown; Igor Jurisica (Bioinform., 2005)

Data Mining for Case-Based Reasoning in High-Dimensional Biological Domains. - Niloofar Arshadi; Igor Jurisica (IEEE Trans. Knowl. Data Eng., 2005)

CasSim: a top-level-simulator for grid scheduling and applications. - Edward Xia; Igor Jurisica; Julie Waterhouse (CASCON, 2006)

Efficient estimation of graphlet frequency distributions in protein-protein interaction networks. - Natasa Przulj; Derek G. Corneil; Igor Jurisica (Bioinform., 2006)

Introduction: Knowledge Discovery in High-Throughput Biological Domains. - Igor Jurisica; Janice I. Glasgow (Inf. Syst. Frontiers, 2006)

Predicting Protein-Protein Interactions by Association Mining. - Max Kotlyar; Igor Jurisica (Inf. Syst. Frontiers, 2006)

Comparison of Machine Learning and Pattern Discovery Algorithms for the Prediction of Human Single Nucleotide Polymorphisms. - Rui Yan 008; Paul C. Boutros; Igor Jurisica; Linda Z. Penn (GrC, 2007)

Detecting Protein-Protein Interaction Sentences Using a Mixture Model. - Yun Niu; Igor Jurisica (NLDB, 2008)

The KBMS Project and Beyond. - Vinay K. Chaudhri; Igor Jurisica; Manolis Koubarakis; Dimitris Plexousakis; Thodoros Topaloglou (Conceptual Modeling: Foundations and Applications, 2009)

NAViGaTOR: Network Analysis, Visualization and Graphing Toronto. - Kevin R. Brown; David Otasek; Muhammad Ali; Michael J. McGuffin; Wing Xie; Baiju Devani; Ian Lawson van Toch; Igor Jurisica (Bioinform., 2009)

Interaction Techniques for Selecting and Manipulating Subgraphs in Network Visualizations. - Michael J. McGuffin; Igor Jurisica (IEEE Trans. Vis. Comput. Graph., 2009)

Runtime Estimation Using the Case-Based Reasoning Approach for Scheduling in a Grid Environment. - Edward Xia; Igor Jurisica; Julie Waterhouse; Valerie Sloan (ICCBR, 2010)

Evaluation of linguistic features useful in extraction of interactions from PubMed; Application to annotating known, high-throughput and predicted interactions in I2D. - Yun Niu; David Otasek; Igor Jurisica (Bioinform., 2010)

The FlowVizMenu and Parallel Scatterplot Matrix: Hybrid Multidimensional Visualizations for Network Exploration. - Christophe Viau; Michael J. McGuffin; Yves Chiricota; Igor Jurisica (IEEE Trans. Vis. Comput. Graph., 2010)

Next-generation, scalable network visualization and analysis. - Amira Djebbari; Igor Jurisica (CASCON, 2011)

Optimized application of penalized regression methods to diverse genomic data. - Levi Waldron; Melania Pintilie; Ming-Sound Tsao; Frances A. Shepherd; Curtis Huttenhower; Igor Jurisica (Bioinform., 2011)

A tree-based approach for motif discovery and sequence classification. - Rui Yan 008; Paul C. Boutros; Igor Jurisica (Bioinform., 2011)

Cancer Computational Biology. - Zohar Yakhini; Igor Jurisica (BMC Bioinform., 2011)

NAViGaTOR: Large Scalable and Interactive Navigation and Analysis of Large Graphs. - Amira Djebbari; Muhammad Ali; David Otasek; Max Kotlyar; Kristen Fortney; Serene Wong; Anthony Hrvojic; Igor Jurisica (Internet Math., 2011)

Ensembles of case-based reasoning classifiers in high-dimensional biological domains. - Niloofar Arshadi; Igor Jurisica (WIREs Data Mining Knowl. Discov., 2011)

Construction of New Medicines via Game Proof Search. - Abraham Heifets; Igor Jurisica (AAAI, 2012)

SCRIPDB: a portal for easy access to syntheses, chemicals and reactions in patents. - Abraham Heifets; Igor Jurisica (Nucleic Acids Res., 2012)

Novel semantic similarity measure improves an integrative approach to predicting gene functional associations. - Fatemeh Vafaee; Daniela Rosu 002; Fiona Broackes-Carter; Igor Jurisica (BMC Syst. Biol., 2013)

NetwoRx: connecting drugs to networks and phenotypes in Saccharomyces cerevisiae. - Kristen Fortney; Wing Xie; Max Kotlyar; Joshua Griesman; Yulia Kotseruba; Igor Jurisica (Nucleic Acids Res., 2013)

Visual Data Mining of Biological Networks: One Size Does Not Fit All. - Chiara Pastrello; David Otasek; Kristen Fortney; Giuseppe Agapito; Mario Cannataro; Elize Shirdel; Igor Jurisica (PLoS Comput. Biol., 2013)

Knowledge Discovery and interactive Data Mining in Bioinformatics - State-of-the-Art, future challenges and research directions. - Andreas Holzinger; Matthias Dehmer; Igor Jurisica (BMC Bioinform., 2014)

Knowledge Discovery and Data Mining in Biomedical Informatics: The Future Is in Integrative, Interactive Machine Learning Solutions. - Andreas Holzinger; Igor Jurisica (Interactive Knowledge Discovery and Data Mining in Biomedical Informatics, 2014)

Visual Data Mining: Effective Exploration of the Biological Universe. - David Otasek; Chiara Pastrello; Andreas Holzinger; Igor Jurisica (Interactive Knowledge Discovery and Data Mining in Biomedical Informatics, 2014)

Where are we at regarding species translation? A review of the sbv IMPROVER challenge. - Julia Hoeng; Manuel C. Peitsch; Pablo Meyer 001; Igor Jurisica (Bioinform., 2015)

Prioritizing Therapeutics for Lung Cancer: An Integrative Meta-analysis of Cancer Gene Signatures and Chemogenomic Data. - Kristen Fortney; Joshua Griesman; Max Kotlyar; Chiara Pastrello; Marc Angeli; Ming-Sound Tsao; Igor Jurisica (PLoS Comput. Biol., 2015)

A Simulated Annealing Algorithm for Maximum Common Edge Subgraph Detection in Biological Networks. - Simon J. Larsen; Frederik G. Alkærsig; Henrik J. Ditzel; Igor Jurisica; Nicolas Alcaraz; Jan Baumbach (GECCO, 2016)

Robust quantitative scratch assay. - Andrea Vargas; Marc Angeli; Chiara Pastrello; Rosanne McQuaid; Han Li; Andrea Jurisicova; Igor Jurisica (Bioinform., 2016)

Integrated interactions database: tissue-specific view of the human and model organism interactomes. - Max Kotlyar; Chiara Pastrello; Nicholas Sheahan; Igor Jurisica (Nucleic Acids Res., 2016)

Machine Learning for In Silico Modeling of Tumor Growth. - Fleur Jeanquartier; Claire Jean-Quartier; Max Kotlyar; Tomás Tokár; Anne-Christin Hauschild; Igor Jurisica; Andreas Holzinger (Machine Learning for Health Informatics, 2016)

Big data analytics: challenges and applications to health care. - Serene Wong; Igor Jurisica (CASCON, 2017)

pathDIP: an annotated resource for known and predicted human gene-pathway associations and pathway enrichment analysis. - Sara Rahmati; Mark Abovsky; Chiara Pastrello; Igor Jurisica (Nucleic Acids Res., 2017)

Data-driven medicine: promise and challenges. - Tomás Tokár; Igor Jurisica; Naomi P. Visanji; Christian Veillette (CASCON, 2018)

SDREGION: Fast Spotting of Changing Communities in Biological Networks. - Serene W. H. Wong; Chiara Pastrello; Max Kotlyar; Christos Faloutsos; Igor Jurisica (KDD, 2018)

Encompassing new use cases - level 3.0 of the HUPO-PSI format for molecular interactions. - M. Sivade Dumousseau; Diego Alonso-López; Mais G. Ammari; Glyn Bradley; Nancy H. Campbell; Arnaud Céol; Gianni Cesareni; Colin W. Combe; Javier De Las Rivas; Noemi del-Toro; Joshua Heimbach; Henning Hermjakob; et al. (BMC Bioinform., 2018)

mirDIP 4.1 - integrative database of human microRNA target predictions. - Tomás Tokár; Chiara Pastrello; Andrea E. M. Rossos; Mark Abovsky; Anne-Christin Hauschild; Mike Tsay; Richard Lu; Igor Jurisica (Nucleic Acids Res., 2018)

IID 2018 update: context-specific physical protein-protein interactions in human, model organisms and domesticated species. - Max Kotlyar; Chiara Pastrello; Zara Malik; Igor Jurisica (Nucleic Acids Res., 2019)

Visualization of Biomedical Networks. - Anne-Christin Hauschild; Chiara Pastrello; Andrea E. M. Rossos; Igor Jurisica (Encyclopedia of Bioinformatics and Computational Biology (1), 2019)

Protein-Protein Interaction Databases. - Max Kotlyar; Chiara Pastrello; Andrea E. M. Rossos; Igor Jurisica (Encyclopedia of Bioinformatics and Computational Biology (1), 2019)

Two Decades of Biological Pathway Databases: Results and Challenges. - Sara Rahmati; Chiara Pastrello; Andrea E. M. Rossos; Igor Jurisica (Encyclopedia of Bioinformatics and Computational Biology (1), 2019)

The IMEx coronavirus interactome: an evolving map of Coronaviridae-host molecular interactions. - Livia Perfetto; Chiara Pastrello; Noemi del-Toro; Margaret J. Duesbury; Marta Iannuccelli; Max Kotlyar; Luana Licata; Birgit Meldal; Kalpana Panneerselvam; Simona Panni; N. Rahimzadeh; Sylvie Ricard-Blum; et al. (Database J. Biol. Databases Curation, 2020)

BioPAX-Parser: parsing and enrichment analysis of BioPAX pathways. - Giuseppe Agapito; Chiara Pastrello; Pietro Hiram Guzzi; Igor Jurisica; Mario Cannataro (Bioinform., 2020)

GSOAP: a tool for visualization of gene set over-representation analysis. - Tomás Tokár; Chiara Pastrello; Igor Jurisica (Bioinform., 2020)

pathDIP 4: an extended pathway annotations and enrichment analysis resource for human, model organisms and domesticated species. - Sara Rahmati; Mark Abovsky; Chiara Pastrello; Max Kotlyar; Richard Lu; Christian A. Cumbaa; Proton Rahman; Vinod Chandran; Igor Jurisica (Nucleic Acids Res., 2020)

Informed Use of Protein-Protein Interaction Data: A Focus on the Integrated Interactions Database (IID). - Chiara Pastrello; Max Kotlyar; Igor Jurisica (Protein-Protein Interaction Networks, 2020)

Comprehensive pathway enrichment analysis workflows: COVID-19 case study. - Giuseppe Agapito; Chiara Pastrello; Igor Jurisica (Briefings Bioinform., 2021)

Pathway integration and annotation: building a puzzle with non-matching pieces and no reference picture. - Giuseppe Agapito; Chiara Pastrello; Yun Niu; Igor Jurisica (Briefings Bioinform., 2022)

miRAnno - network-based functional microRNA annotation. - Tomás Tokár; Chiara Pastrello; Mark Abovsky; Sara Rahmati; Igor Jurisica (Bioinform., 2022)

Information fusion as an integrative cross-cutting enabler to achieve robust, explainable, and trustworthy medical artificial intelligence. - Andreas Holzinger; Matthias Dehmer; Frank Emmert-Streib; Rita Cucchiara; Isabelle Augenstein; Javier Del Ser; Wojciech Samek; Igor Jurisica; Natalia Díaz Rodríguez (Inf. Fusion, 2022)

IID 2021: towards context-specific protein interaction analyses by increased coverage, enhanced annotation and enrichment analysis. - Max Kotlyar; Chiara Pastrello; Zuhaib Ahmed; Justin Chee; Zofia Varyova; Igor Jurisica (Nucleic Acids Res., 2022)

MirDIP 5.2: tissue context annotation and novel microRNA curation. - Anne-Christin Hauschild; Chiara Pastrello; Gitta Kirana Anindya Ekaputeri; Dylan Bethune-Waddell; Mark Abovsky; Zuhaib Ahmed; Max Kotlyar; Richard Lu; Igor Jurisica (Nucleic Acids Res., 2023)

USNAP: fast unique dense region detection and its application to lung cancer. - Serene W. H. Wong; Chiara Pastrello; Max Kotlyar; Christos Faloutsos; Igor Jurisica (Bioinform., 2023)