The Route of HIV Escape from Immune Response Targeting Multiple Sites Is Determined by the Cost-Benefit Tradeoff of Escape Mutations. - Rebecca Batorsky; Rinat A. Sergeev; Igor M. Rouzine (PLoS Comput. Biol., 2014)

Conflicting Selection Pressures Will Constrain Viral Escape from Interfering Particles: Principles for Designing Resistance-Proof Antivirals. - Luke I. Rast; Igor M. Rouzine; Ganna Rozhnova; Lisa Bishop; Ariel D. Weinberger; Leor S. Weinberger (PLoS Comput. Biol., 2016)

Evolutionary footprint of epistasis. - Gabriele Pedruzzi; Ayuna Barlukova; Igor M. Rouzine (PLoS Comput. Biol., 2018)

The evolutionary origin of the universal distribution of mutation fitness effect. - Ayuna Barlukova; Igor M. Rouzine (PLoS Comput. Biol., 2021)