Information Theoretic Approaches to Whole Genome Phylogenies. - David Burstein; Igor Ulitsky; Tamir Tuller; Benny Chor (RECOMB, 2005)

The Average Common Substring Approach to Phylogenomic Reconstruction. - Igor Ulitsky; David Burstein; Tamir Tuller; Benny Chor (J. Comput. Biol., 2006)

Identification of functional modules using network topology and high-throughput data. - Igor Ulitsky; Ron Shamir (BMC Syst. Biol., 2007)

Detecting Disease-Specific Dysregulated Pathways Via Analysis of Clinical Expression Profiles. - Igor Ulitsky; Richard M. Karp; Ron Shamir (RECOMB, 2008)

SPIKE - a database, visualization and analysis tool of cellular signaling pathways. - Ran Elkon; Rita Vesterman; Nira Amit; Igor Ulitsky; Idan Zohar; Mali Weisz; Gilad Mass; Nir Orlev; Giora Sternberg; Ran Blekhman; Jackie Assa; Yosef Shiloh; et al. (BMC Bioinform., 2008)

Identifying functional modules using expression profiles and confidence-scored protein interactions. - Igor Ulitsky; Ron Shamir (Bioinform., 2009)

Network-based algorithms for analysis of heterogeneous biomedical data - Igor Ulitsky (2009)

Discovering Transcriptional Modules by Combined Analysis of Expression Profiles and Regulatory Sequences. - Yonit Halperin; Chaim Linhart; Igor Ulitsky; Ron Shamir (RECOMB, 2010)

SPIKE: a database of highly curated human signaling pathways. - Arnon Paz; Zippora Brownstein; Yaara Ber; Shani Bialik; Eyal David; Dorit Sagir; Igor Ulitsky; Ran Elkon; Adi Kimchi; Karen B. Avraham; Yosef Shiloh; Ron Shamir (Nucleic Acids Res., 2011)

CENTRE: a gradient boosting algorithm for Cell-type-specific ENhancer-Target pREdiction. - Trisevgeni Rapakoulia; Sara Lopez Ruiz De Vargas; Persia Akbari Omgba; Verena Laupert; Igor Ulitsky; Martin Vingron (Bioinform., 2023)

Deep Learning for RNA Regulation and Multidimensional Transcriptomics (Dagstuhl Seminar 24491). - Annalisa Marsico; Uwe Ohler; Igor Ulitsky; Kathi Zarnack; Charlotte Capitanchik (Dagstuhl Reports, 2024)