Engineering a 1: 2 Bio-multiplexer for controlled stem cell differentiation. - Sairam Subramanian; Ihor Lemischka; Ron Weiss (CSB Workshops, 2005)

A Genomewide Functional Network for the Laboratory Mouse. - Yuanfang Guan; Chad L. Myers; Rong Lu; Ihor Lemischka; Carol J. Bult; Olga G. Troyanskaya (PLoS Comput. Biol., 2008)

GATE: software for the analysis and visualization of high-dimensional time series expression data. - Ben D. MacArthur; Alexander Lachmann; Ihor Lemischka; Avi Ma'ayan (Bioinform., 2010)

SVM classifier to predict genes important for self-renewal and pluripotency of mouse embryonic stem cells. - Huilei Xu; Ihor Lemischka; Avi Ma'ayan (BMC Syst. Biol., 2010)

Mapping Dynamic Histone Acetylation Patterns to Gene Expression in Nanog-Depleted Murine Embryonic Stem Cells. - Florian Markowetz; Klaas W. Mulder; Edoardo M. Airoldi; Ihor Lemischka; Olga G. Troyanskaya (PLoS Comput. Biol., 2010)

ESCAPE: database for integrating high-content published data collected from human and mouse embryonic stem cells. - Huilei Xu; Caroline Baroukh; Ruth Dannenfelser; Edward Y. Chen; Christopher M. Tan; Yan Kou; Yujin E. Kim; Ihor Lemischka; Avi Ma'ayan (Database J. Biol. Databases Curation, 2013)

Construction and Validation of a Regulatory Network for Pluripotency and Self-Renewal of Mouse Embryonic Stem Cells. - Huilei Xu; Yen-Sin Ang; Ana Sevilla; Ihor Lemischka; Avi Ma'ayan (PLoS Comput. Biol., 2014)

NetExplore: a web server for modeling small network motifs. - Dmitri A. Papatsenko; Ihor R. Lemischka (Bioinform., 2015)

Distribution Analyzer, a methodology for identifying and clustering outlier conditions from single-cell distributions, and its application to a Nanog reporter RNAi screen. - Julian Gingold; Ed Coakley; Jie Su; Dung-Fang Lee; Zerlina Lau; Hongwei Zhou; Dan Felsenfeld; Christoph Schaniel; Ihor Lemischka (BMC Bioinform., 2015)