Bayesian tracking for fluorescence microscopic imaging. - Ihor Smal; Wiro J. Niessen; Erik Meijering (ISBI, 2006)

Tracking in molecular bioimaging. - Erik Meijering; Ihor Smal; Gaudenz Danuser (IEEE Signal Process. Mag., 2006)

Bayesian Tracking of Elongated Structures in 3D Images. - Michiel Schaap; Ihor Smal; Coert Metz; Theo van Walsum; Wiro J. Niessen (IPMI, 2007)

Rao-Blackwellized Marginal Particle Filtering for Multiple Object Tracking in Molecular Bioimaging. - Ihor Smal; Katharina Draegestein; Niels Galjart; Wiro J. Niessen; Erik Meijering (IPMI, 2007)

Advanced Particle Filtering for Multiple Object Tracking in Dynamic Fluorescence Microscopy Images. - Ihor Smal; Wiro J. Niessen; Erik Meijering (ISBI, 2007)

Bayesian Tracking of Tubular Structures and Its Application to Carotid Arteries in CTA. - Michiel Schaap; Rashindra Manniesing; Ihor Smal; Theo van Walsum; Aad van der Lugt; Wiro J. Niessen (MICCAI (2), 2007)

A new detection scheme for multiple object tracking in fluorescence microscopy by joint probabilistic data association filtering. - Ihor Smal; Wiro J. Niessen; Erik Meijering (ISBI, 2008)

Multiple object tracking in molecular bioimaging by Rao-Blackwellized marginal particle filtering. - Ihor Smal; Erik Meijering; Katharina Draegestein; Niels Galjart; Ilya Grigoriev; Anna Akhmanova; M. E. van Royen; Adriaan B. Houtsmuller; Wiro J. Niessen (Medical Image Anal., 2008)

Particle Filtering for Multiple Object Tracking in Dynamic Fluorescence Microscopy Images: Application to Microtubule Growth Analysis. - Ihor Smal; Katharina Draegestein; Niels Galjart; Wiro J. Niessen; Erik Meijering (IEEE Trans. Medical Imaging, 2008)

Quantitative Comparison of Spot Detection Methods in Live-Cell Fluorescence Microscopy Imaging. - Ihor Smal; Marco Loog; Wiro J. Niessen; Erik Meijering (ISBI, 2009)

Particle filtering methods for motion analysis in tagged MRI. - Ihor Smal; Wiro J. Niessen; Erik Meijering (ISBI, 2010)

Microtubule Dynamics Analysis Using Kymographs and Variable-Rate Particle Filters. - Ihor Smal; Ilya Grigoriev; Anna Akhmanova; Wiro J. Niessen; Erik Meijering (IEEE Trans. Image Process., 2010)

Quantitative Comparison of Spot Detection Methods in Fluorescence Microscopy. - Ihor Smal; Marco Loog; Wiro J. Niessen; Erik Meijering (IEEE Trans. Medical Imaging, 2010)

Automated lineage tree reconstruction from Caenorhabditis elegans image data using particle filtering based cell tracking. - Noemí Carranza-Herrezuelo; Ihor Smal; Oleh Dzyubachyk; Wiro J. Niessen; Erik Meijering (ISBI, 2011)

Quantitative comparison of tracking methods for motion analysis in tagged MRI. - Ihor Smal; Noemí Carranza-Herrezuelo; Stefan Klein 001; Wiro J. Niessen; Erik Meijering (ISBI, 2011)

Trans-Dimensional MCMC Methods for Fully Automatic Motion Analysis in Tagged MRI. - Ihor Smal; Noemí Carranza-Herrezuelo; Stefan Klein 001; Wiro J. Niessen; Erik Meijering (MICCAI (1), 2011)

Reversible jump MCMC methods for fully automatic motion analysis in tagged MRI. - Ihor Smal; Noemí Carranza-Herrezuelo; Stefan Klein 001; Piotr Wielopolski; Adriaan Moelker; Tirza Springeling; Monique Bernsen; Wiro J. Niessen; Erik Meijering (Medical Image Anal., 2012)

PPF - A Parallel Particle Filtering Library. - Ömer Demirel; Ihor Smal; Wiro J. Niessen; Erik Meijering; Ivo F. Sbalzarini (CoRR, 2013)

Piecewise Constant Sequential Importance Sampling for Fast Particle Filtering. - Ömer Demirel; Ihor Smal; Wiro J. Niessen; Erik Meijering; Ivo F. Sbalzarini (CoRR, 2013)

An adaptive distributed resampling algorithm with non-proportional allocation. - Ömer Demirel; Ihor Smal; Wiro J. Niessen; Erik Meijering; Ivo F. Sbalzarini (ICASSP, 2014)

Fuzzy logic based detection of neuron bifurcations in microscopy images. - Miroslav Radojevic; Ihor Smal; Wiro J. Niessen; Erik Meijering (ISBI, 2014)

Automated neuron morphology reconstruction using fuzzy-logic detection and Bayesian tracing algorithms. - Miroslav Radojevic; Ihor Smal; Erik Meijering (ISBI, 2015)

3D Catheter Tip Tracking in 2D X-Ray Image Sequences Using a Hidden Markov Model and 3D Rotational Angiography. - Pierre Ambrosini; Ihor Smal; Daniel Ruijters; Wiro J. Niessen; Adriaan Moelker; Theo van Walsum (AE-CAI, 2015)

Quantitative comparison of multiframe data association techniques for particle tracking in time-lapse fluorescence microscopy. - Ihor Smal; Erik Meijering (Medical Image Anal., 2015)

Poisson Point Processes for Solving Stochastic Inverse Problems in Fluorescence Microscopy. - Ihor Smal; Erik Meijering (ECCV Workshops (1), 2016)

Automatic detection of neurons in high-content microscope images using machine learning approaches. - Gadea Mata; Miroslav Radojevic; Ihor Smal; Miguel Morales; Erik Meijering; Julio Rubio 001 (ISBI, 2016)

Marker-Less Stage Drift Correction in Super-Resolution Microscopy Using the Single-Cluster PHD Filter. - Isabel Schlangen; Jose Franco; Jeremie Houssineau; William T. E. Pitkeathly; Daniel Edward Clark; Ihor Smal; Colin Rickman (IEEE J. Sel. Top. Signal Process., 2016)

Fuzzy-Logic Based Detection and Characterization of Junctions and Terminations in Fluorescence Microscopy Images of Neurons. - Miroslav Radojevic; Ihor Smal; Erik Meijering (Neuroinformatics, 2016)

Gaussian processes for trajectory analysis in microtubule tracking applications. - Ihor Smal; Sreya Basu; Laura Sayas; Niels Galjart; Erik Meijering (ISBI, 2017)

Stochastic optimization with randomized smoothing for image registration. - Wei Sun 014; Dirk H. J. Poot; Ihor Smal; Xuan Yang; Wiro J. Niessen; Stefan Klein 001 (Medical Image Anal., 2017)

A Hidden Markov Model for 3D Catheter Tip Tracking With 2D X-ray Catheterization Sequence and 3D Rotational Angiography. - Pierre Ambrosini; Ihor Smal; Daniel Ruijters; Wiro J. Niessen; Adriaan Moelker; Theo van Walsum (IEEE Trans. Medical Imaging, 2017)

Accurate estimation of intracellular dynamics and underlying spatial structures using hierarchical trajectory smoothing. - Ihor Smal; Niels Galjart; Erik Meijering (ISBI, 2018)

Deep neural networks for data association in particle tracking. - Yao Yao; Ihor Smal; Erik Meijering (ISBI, 2018)

Nerve Fiber Segmentation in Bright-Field Microscopy Images of Skin Biopsies Using Deep Learning. - Herman Bergwerf; Malik Bechakra; Ihor Smal; Joost L. M. Jongen; Erik Meijering (ISBI, 2019)

Facilitating Data Association In Particle Tracking Using Autoencoding And Score Matching. - Ihor Smal; Yao Yao; Niels Galjart; Erik Meijering (ISBI, 2019)

Automated Neuron Detection in High-Content Fluorescence Microscopy Images Using Machine Learning. - Gadea Mata; Miroslav Radojevic; Carlos Fernandez-Lozano; Ihor Smal; Niels Werij; Miguel Morales; Erik Meijering; Julio Rubio 001 (Neuroinformatics, 2019)

Deep-learning method for data association in particle tracking. - Yao Yao; Ihor Smal; Ilya Grigoriev; Anna Akhmanova; Erik Meijering (Bioinform., 2020)

Dynamic coronary roadmapping via catheter tip tracking in X-ray fluoroscopy with deep learning based Bayesian filtering. - Hua Ma 001; Ihor Smal; Joost Daemen; Theo van Walsum (Medical Image Anal., 2020)

Detection Of Replication Forks In Em Images Using Faster R-Cnn. - Wei Zhao; Eleni Maria Manolika; Arnab Ray Chaudhuri; Ihor Smal (ISBI, 2021)

Identification of Diffusive States in Tracking Applications Using Unsupervised Deep Learning Methods. - Hélène Kabbech; Ihor Smal (ISBI, 2022)

Accurate Estimation of Particle Dynamics Bypassing Substrate Drift Bias: Application to Cell Nucleus Motion. - Hélène Kabbech; Jente van Staalduinen; Frank Grosveld; Ihor Smal (ISBI, 2023)

CA-LIME: An Algorithm that Explains Classification Results of Cardiomyocyte Beating. - Tijmen H. de Wolf; Matthijs Snelders; Jeroen Essers; Ihor Smal (ISBI, 2023)

An Iterative Frequency-Based Approach for Gelmap Grid Deformation Correction. - Vincent J. W. Hellebrekers; Josiah B. Passmore; Lukas C. Kapitein; Ihor Smal (ISBI, 2024)

Weakly Supervised 3d Image Segmentation in Fluorescence Microscopy Using Maximum Intensity Projections. - Tijmen H. de Wolf; Daria Roman; Julie Nonnekens; Ihor Smal (ISBI, 2024)

Self-adaptive deep learning-based segmentation for universal and functional clinical and preclinical CT image analysis. - Anne-Wietje Zwijnen; Leon Watzema; Yanto Ridwan; Ingrid van Der Pluijm; Ihor Smal; Jeroen Essers (Comput. Biol. Medicine, 2024)

Deep Joint Denoising and Detection for Enhanced Intracellular Particle Analysis. - Yao Yao; Ihor Smal; Ilya Grigoriev; Anna Akhmanova; Erik Meijering (CoRR, 2024)

TrackSegNet: a tool for trajectory segmentation into diffusive states using supervised deep learning. - Hélène Kabbech; Ihor Smal (J. Open Source Softw., 2024)

Automated image registration of cerebral digital subtraction angiography. - Vincent J. W. Hellebrekers; Theo van Walsum; Ihor Smal; Sandra A. P. Cornelissen; Wim H. van Zwam; Aad van der Lugt; Matthijs van der Sluijs; Ruisheng Su (Int. J. Comput. Assist. Radiol. Surg., 2024)