Numerical examination of the extended phase-space volume-preserving integrator by the Nosé-Hoover molecular dynamics equations. - Séverine Queyroy; Haruki Nakamura; Ikuo Fukuda (J. Comput. Chem., 2009)

mDCC_tools: characterizing multi-modal atomic motions in molecular dynamics trajectories. - Kota Kasahara; Neetha Mohan; Ikuo Fukuda; Haruki Nakamura (Bioinform., 2016)

Performance evaluation of the zero-multipole summation method in modern molecular dynamics software. - Shun Sakuraba; Ikuo Fukuda (J. Comput. Chem., 2018)

Molecular Interaction Mechanism of a 14-3-3 Protein with a Phosphorylated Peptide Elucidated by Enhanced Conformational Sampling. - Junichi Higo; Takeshi Kawabata; Ayumi Kusaka; Kota Kasahara; Narutoshi Kamiya; Ikuo Fukuda; Kentaro Mori; Yutaka Hata; Yoshifumi Fukunishi; Haruki Nakamura (J. Chem. Inf. Model., 2020)

Flexibility and Cell Permeability of Cyclic Ras-Inhibitor Peptides Revealed by the Coupled Nosé-Hoover Equation. - Kei Moritsugu; Koh Takeuchi; Narutoshi Kamiya; Junichi Higo; Isao Yasumatsu; Yoshifumi Fukunishi; Ikuo Fukuda (J. Chem. Inf. Model., 2021)

Towards a Clinical Implementation of Measuring the Elastic Modulus of the Aorta From Cardiac Computed Tomography Images. - Takashi Shirakawa; Toru Kuratani; Masao Yoshitatsu; Kazuo Shimamura; Shinya Fukui; Akira Kurata; Yasushi Koyama; Koichi Toda; Ikuo Fukuda; Yoshiki Sawa (IEEE Trans. Biomed. Eng., 2021)