Ophiuchus: Scalable Modeling of Protein Structures through Hierarchical Coarse-graining SO(3)-Equivariant Autoencoders. - Allan dos Santos Costa; Ilan Mitnikov; Mario Geiger; Manvitha Ponnapati; Tess E. Smidt; Joseph Jacobson (CoRR, 2023)

E3STO: Orbital Inspired SE(3)-Equivariant Molecular Representation for Electron Density Prediction. - Ilan Mitnikov; Joseph Jacobson (CoRR, 2024)

EquiJump: Protein Dynamics Simulation via SO(3)-Equivariant Stochastic Interpolants. - Allan dos Santos Costa; Ilan Mitnikov; Franco Pellegrini; Ameya Daigavane; Mario Geiger; Zhonglin Cao; Karsten Kreis; Tess E. Smidt; Emine Küçükbenli; Joseph Jacobson (CoRR, 2024)