ResponseNet: revealing signaling and regulatory networks linking genetic and transcriptomic screening data. - Alex Lan; Ilan Y. Smoly; Guy Rapaport; Susan Lindquist; Ernest Fraenkel; Esti Yeger Lotem (Nucleic Acids Res., 2011)

The TissueNet database of human tissue protein-protein interactions. - Ruth Barshir; Omer Basha; Amir Eluk; Ilan Y. Smoly; Alexander Lan; Esti Yeger Lotem (Nucleic Acids Res., 2013)

Comparative Analysis of Human Tissue Interactomes Reveals Factors Leading to Tissue-Specific Manifestation of Hereditary Diseases. - Ruth Barshir; Omer Shwartz; Ilan Y. Smoly; Esti Yeger Lotem (PLoS Comput. Biol., 2014)

MyProteinNet: build up-to-date protein interaction networks for organisms, tissues and user-defined contexts. - Omer Basha; Dvir Flom; Ruth Barshir; Ilan Y. Smoly; Shoval Tirman; Esti Yeger Lotem (Nucleic Acids Res., 2015)

Algorithms for Regular Tree Grammar Network Search and Their Application to Mining Human-viral Infection Patterns. - Ilan Y. Smoly; Amir Carmel; Yonat Shemer-Avni; Esti Yeger Lotem; Michal Ziv-Ukelson (J. Comput. Biol., 2016)

MotifNet: a web-server for network motif analysis. - Ilan Y. Smoly; Eugene Lerman; Michal Ziv-Ukelson; Esti Yeger Lotem (Bioinform., 2017)

An Asymmetrically Balanced Organization of Kinases versus Phosphatases across Eukaryotes Determines Their Distinct Impacts. - Ilan Y. Smoly; Netta Shemesh; Michal Ziv-Ukelson; Anat Ben-Zvi; Esti Yeger Lotem (PLoS Comput. Biol., 2017)