Genome-Wide Prokaryotic Promoter Recognition Based on Sequence Alignment Kernel. - Leo Gordon; Alexey Ya. Chervonenkis; Alex J. Gammerman; Ilham A. Shahmuradov; Victor V. Solovyev (IDA, 2003)

Sequence alignment kernel for recognition of promoter regions. - Leo Gordon; Alexey Ya. Chervonenkis; Alex J. Gammerman; Ilham A. Shahmuradov; Victor V. Solovyev (Bioinform., 2003)

PlantProm: a database of plant promoter sequences. - Ilham A. Shahmuradov; Alex J. Gammerman; John M. Hancock; Peter M. Bramley; Victor V. Solovyev (Nucleic Acids Res., 2003)

PromH: promoters identification using orthologous genomic sequences. - Victor V. Solovyev; Ilham A. Shahmuradov (Nucleic Acids Res., 2003)

Nsite, NsiteH and NsiteM computer tools for studying transcription regulatory elements. - Ilham A. Shahmuradov; Victor V. Solovyev (Bioinform., 2015)

bTSSfinder: a novel tool for the prediction of promoters in cyanobacteria and Escherichia coli. - Ilham A. Shahmuradov; Rozaimi Mohamad Razali; Salim Bougouffa; Aleksandar Radovanovic; Vladimir B. Bajic (Bioinform., 2017)