MPRAnator: a web-based tool for the design of massively parallel reporter assay experiments. - Ilias Georgakopoulos-Soares; Naman Jain; Jesse M. Gray; Martin Hemberg (Bioinform., 2017)

On the use of the Perlin noise function to calculate the laser absorption coefficient by rough surfaces. - Ilias Georgakopoulos-Soares; Emmanouil L. Papazoglou; Angelos P. Markopoulos (Simul. Model. Pract. Theory, 2023)

ZSeeker: an optimized algorithm for Z-DNA detection in genomic sequences. - Guliang Wang; Ioannis Mouratidis; Kimonas Provatas; Nikol Chantzi; Michail Patsakis; Ilias Georgakopoulos-Soares; Karen M. Vasquez (Briefings Bioinform., 2025)

A multi-omics analysis of effector and resting treg cells in pan-cancer. - Anna-Maria Chalepaki; Marios Gkoris; Irene Chondrou; Malamati Kourti; Ilias Georgakopoulos-Soares; Apostolos Zaravinos (Comput. Biol. Medicine, 2025)

MAFcounter: an efficient tool for counting the occurrences of k-mers in MAF files. - Michail Patsakis; Kimonas Provatas; Aris Karatzikos; Charalampos Koilakos; Ioannis Mouratidis; Ilias Georgakopoulos-Soares (BMC Bioinform., 2025)