Automated Structural Classification of Proteins by Using Decision Trees and Structural Protein Features. - Slobodan Kalajdziski; Bojan Pepik; Ilinka Ivanovska; Georgina Mirceva; Kire Trivodaliev; Danco Davcev (ICT Innovations, 2009)

Wireless Sensor Networks Localization Methods: Multidimensional Scaling vs. Semidefinite Programming Approach. - Biljana L. Stojkoska; Ilinka Ivanoska; Danco Davcev (ICT Innovations, 2009)

Comparison of Protein Descriptors Used in Hierarchical Multi-label Classification Based on Gene Ontology. - Natasha Pavlovikj; Ilinka Ivanoska; Slobodan Kalajdziski (ICT Innovations, 2011)

Novel Gene Ontology Based Distance Metric for Function Prediction via Clustering in Protein Interaction Networks. - Kire Trivodaliev; Ilinka Ivanoska; Slobodan Kalajdziski; Ljupco Kocarev (ICT Innovations, 2014)

RS-fMRI Data Analysis for Identification of Changes in Functional Connectivity Networks of Bi-polar Patients. - Tommy Boshkovski; Ilinka Ivanoska; Kire Trivodaliev; Slobodan Kalajdziski; Pablo Villoslada; Magí Andorrà; Vesna Prckovska; Ljupco Kocarev (ICT Innovations, 2015)

Cuisine classification using recipe's ingredients. - Slobodan Kalajdziski; Gorjan Radevski; Ilinka Ivanoska; Kire Trivodaliev; Biljana Risteska Stojkoska (MIPRO, 2018)

Intelligent analysis of economic parameters of European countries. - Mihail Petkov; Biljana Risteska Stojkoska; Slobodan Kalajdziski; Ilinka Ivanoska; Kire Trivodaliev (MIPRO, 2018)

Web tool for graph embeddings representation techniques evaluation. - Ilinka Ivanoska; Martin Milenkoski; Slobodan Kalajdziski; Kire Trivodaliev (MIPRO, 2019)

Feature Selection for Improved Classification of Protein Structures. - Georgina Mirceva; Ilinka Ivanoska; Andreja Naumoski; Andrea Kulakov (MIPRO, 2019)

Analysing the Influence of Two Similarity Metrics on the Ant Colony Optimisation Based Fuzzy-Rough Feature Selection Algorithm. - Andreja Naumoski; Ilinka Ivanoska; Georgina Mirceva (MIPRO, 2019)

Comparative Analysis of Network Embeddings for Functional Annotation in Protein Interaction Networks. - Ilinka Ivanoska; E. Petreska; Biljana Risteska Stojkoska; Slobodan Kalajdziski; Kire Trivodaliev (MIPRO, 2020)

An Exploration of Autism Spectrum Disorder Classification from Structural and Functional MRI Images. - Jovan Krajevski; Ilinka Ivanoska; Kire Trivodaliev; Slobodan Kalajdziski; Sonja Gievska (ICT Innovations, 2022)

Assessing Identifiability in Airport Delay Propagation Roles Through Deep Learning Classification. - Ilinka Ivanoska; Luisina Pastorino; Massimiliano Zanin (IEEE Access, 2022)

A Fast Transform for Brain Connectivity Difference Evaluation. - Massimiliano Zanin; Ilinka Ivanoska; Bahar Güntekin; Görsev Yener; Tatjana Loncar-Turukalo; Niksa Jakovljevic; Olivera Sveljo; David Papo (Neuroinformatics, 2022)

Multiplex Collaboration Network of the Faculty of Computer Science and Engineering in Skopje. - Ilinka Ivanoska; Kire Trivodaliev; Bojan Ilijoski (ICT Innovations, 2023)

Hyperparameter Optimization of Graph Neural Networks for mRNA Degradation Prediction. - Viktorija Vodilovska; Sonja Gievska; Ilinka Ivanoska (MIPRO, 2023)