Estimating real cell size distribution from cross-section microscopy imaging. - Michael Lenz; Nadia J. T. Roumans; Roel G. Vink; Marleen A. van Baak; Edwin C. M. Mariman; Ilja C. W. Arts; Theo M. de Kok; Gökhan Ertaylan (Bioinform., 2016)

A computational model of postprandial adipose tissue lipid metabolism derived using human arteriovenous stable isotope tracer data. - Shauna D. O'Donovan; Michael Lenz; Roel G. Vink; Nadia J. T. Roumans; Theo M. de Kok; Edwin C. M. Mariman; Ralf L. M. Peeters; Natal A. W. van Riel; Marleen A. van Baak; Ilja C. W. Arts (PLoS Comput. Biol., 2019)

microViz: an R package for microbiome data visualization and statistics. - David J. M. Barnett; Ilja C. W. Arts; John Penders (J. Open Source Softw., 2021)

Personalized computational model quantifies heterogeneity in postprandial responses to oral glucose challenge. - Balázs Erdos; Bart van Sloun; Michiel E. Adriaens; Shauna D. O'Donovan; Dominique Langin; Arne Astrup; Ellen E. Blaak; Ilja C. W. Arts; Natal A. W. van Riel (PLoS Comput. Biol., 2021)

Comparison of metabolic states using genome-scale metabolic models. - Chaitra Sarathy; Marian Breuer; Martina Kutmon; Michiel E. Adriaens; Chris T. A. Evelo; Ilja C. W. Arts (PLoS Comput. Biol., 2021)

Analysis of high-dimensional metabolomics data with complex temporal dynamics using RM-ASCA+. - Balázs Erdos; Johan A. Westerhuis; Michiel E. Adriaens; Shauna D. O'Donovan; Ren Xie; Cécile M. Singh-Povel; Age K. Smilde; Ilja C. W. Arts (PLoS Comput. Biol., 2023)