The Immune Epitope Database 2.0. - Randi Vita; Laura Zarebski; Jason Greenbaum; Hussein Emami; Ilka Hoof; Nima Salimi; Rohini Damle; Alessandro Sette; Björn Peters (Nucleic Acids Res., 2010)

Proteome Sampling by the HLA Class I Antigen Processing Pathway. - Ilka Hoof; Debbie van Baarle; William H. Hildebrand; Can Kesmir (PLoS Comput. Biol., 2012)

Estimating the Fitness Cost of Escape from HLA Presentation in HIV-1 Protease and Reverse Transcriptase. - Rafal Mostowy; Roger D. Kouyos; Ilka Hoof; Trevor Hinkley; Mojgan Haddad; Jeannette M. Whitcomb; Christos J. Petropoulos; Can Kesmir; Sebastian Bonhoeffer (PLoS Comput. Biol., 2012)

SigniSite: Identification of residue-level genotype-phenotype correlations in protein multiple sequence alignments. - Leon Eyrich Jessen; Ilka Hoof; Ole Lund; Morten Nielsen 001 (Nucleic Acids Res., 2013)

A promoter-level mammalian expression atlas. - Fantom Consortium; RIKEN PMII; RIKEN CLST (DGT); Alistair R. R. Forrest; Hideya Kawaji; Michael Rehli; J. Kenneth Baillie; Michiel J. L. de Hoon; Vanja Haberle; Timo Lassmann; Ivan V. Kulakovskiy; Marina Lizio; et al. (Nat., 2014)