Selecting targets for structural determination by navigating in a graph of protein families. - Elon Portugaly; Ilona Kifer; Michal Linial (Bioinform., 2002)

Predicting fold novelty based on ProtoNet hierarchical classification. - Ilona Kifer; Ori Sasson; Michal Linial (Bioinform., 2005)

Hierarchical Algorithms for protein structure prediction - Ilona Kifer (2010)

GOSSIP: a method for fast and accurate global alignment of protein structures. - Ilona Kifer; Ruth Nussinov; Haim J. Wolfson (Bioinform., 2011)

Optimizing analytical depth and cost efficiency of IEF-LC/MS proteomics. - Ilona Kifer; Amir Ben-Dor; Zohar Yakhini; Rui Mamede Branca; Janne Lehtiö; Ping Xu (BIBM, 2014)

RNAPattMatch: a web server for RNA sequence/structure motif detection based on pattern matching with flexible gaps. - Matan Drory Retwitzer; Maya Polishchuk; Elena Churkin; Ilona Kifer; Zohar Yakhini; Danny Barash (Nucleic Acids Res., 2015)

Mutual enrichment in aggregated ranked lists with applications to gene expression regulation. - Dalia Cohn-Alperovich; Alona Rabner; Ilona Kifer; Yael Mandel-Gutfreund; Zohar Yakhini (Bioinform., 2017)

Optimizing Analytical Depth and Cost Efficiency of IEF-LC/MS Proteomics. - Ilona Kifer; Rui Mamede Branca; Amir Ben-Dor; Linhui Zhai; Ping Xu; Janne Lehtiö; Zohar Yakhini (IEEE ACM Trans. Comput. Biol. Bioinform., 2017)