Spectral-based automatic labeling and refining of human cortical sulcal curves using expert-provided examples. - Ilwoo Lyu; Joon-Kyung Seong; Sung Yong Shin; Kiho Im; Jee Hoon Roh; Minjeong Kim; Geon Ha Kim; Jong Hun Kim; Alan C. Evans; Duk L. Na; Jong-Min Lee (NeuroImage, 2010)

Multiple Atlases-Based Joint Labeling of Human Cortical Sulcal Curves. - Ilwoo Lyu; Gang Li 001; Minjeong Kim; Dinggang Shen (MCV, 2012)

Group-Wise Cortical Correspondence via Sulcal Curve-Constrained Entropy Minimization. - Ilwoo Lyu; Sun Hyung Kim; Joon-Kyung Seong; Sang Wook Yoo; Alan C. Evans; Yundi Shi; Mar Sanchez; Marc Niethammer; Martin Andreas Styner (IPMI, 2013)

Geodesic Distances to Landmarks for Dense Correspondence on Ensembles of Complex Shapes. - Manasi Datar; Ilwoo Lyu; Sun Hyung Kim; Joshua E. Cates; Martin Andreas Styner; Ross T. Whitaker (MICCAI (2), 2013)

Particle-Guided Image Registration. - Joohwi Lee; Ilwoo Lyu; Ipek Oguz; Martin Andreas Styner (MICCAI (3), 2013)

Cortical correspondence via sulcal curve-constrained spherical registration with application to Macaque studies. - Ilwoo Lyu; Sun Hyung Kim; Joon-Kyung Seong; Sang Wook Yoo; Alan C. Evans; Yundi Shi; Mar Sanchez; Marc Niethammer; Martin A. Styner (Image Processing, 2013)

Multi-atlas segmentation with particle-based group-wise image registration. - Joohwi Lee; Ilwoo Lyu; Martin Styner (Image Processing, 2014)

Automatic sulcal curve extraction on the human cortical surface. - Ilwoo Lyu; Sun Hyung Kim; Martin Styner (Image Processing, 2015)

Cortical surface shape assessment via sulcal/gyral curve-based gyrification index. - Ilwoo Lyu; Sun Hyung Kim; Martin Andreas Styner (ISBI, 2016)

Multi-object model-based multi-atlas segmentation for rodent brains using dense discrete correspondences. - Joohwi Lee; Ilwoo Lyu; Martin Styner (Image Processing, 2016)

Development of cortical shape in the human brain from 6 to 24 months of age via a novel measure of shape complexity. - Sun Hyung Kim; Ilwoo Lyu; Vladimir S. Fonov; Clement Vachet; Heather Cody Hazlett; Rachel Gimpel Smith; Joseph Piven; Stephen Dager; Robert C. McKinstry; John R. Pruett Jr.; Alan C. Evans; D. Louis Collins; et al. (NeuroImage, 2016)

Novel Local Shape-Adaptive Gyrification Index with Application to Brain Development. - Ilwoo Lyu; Sun Hyung Kim; Jessica Bullins; John H. Gilmore; Martin A. Styner (MICCAI (1), 2017)

A Data Colocation Grid Framework for Big Data Medical Image Processing - Backend Design. - Shunxing Bao; Yuankai Huo; Prasanna Parvathaneni; Andrew J. Plassard; Camilo Bermudez; Yuang Yao; Ilwoo Lyu; Aniruddha S. Gokhale; Bennett A. Landman (CoRR, 2017)

Technology Enablers for Big Data, Multi-Stage Analysis in Medical Image Processing. - Shunxing Bao; Prasanna Parvathaneni; Yuankai Huo; Yogesh D. Barve; Andrew J. Plassard; Yuang Yao; Hongyang Sun 001; Ilwoo Lyu; David H. Zald; Bennett A. Landman; Aniruddha S. Gokhale (IEEE BigData, 2018)

Hierarchical Spherical Deformation for Shape Correspondence. - Ilwoo Lyu; Martin A. Styner; Bennett A. Landman (MICCAI (1), 2018)

Fully convolutional neural networks improve abdominal organ segmentation. - Meg F. Bobo; Shunxing Bao; Yuankai Huo; Yuang Yao; Jack Virostko; Andrew J. Plassard; Ilwoo Lyu; Albert Assad; Richard G. Abramson; Melissa A. Hilmes; Bennett A. Landman (Image Processing, 2018)

Sulcal depth-based cortical shape analysis in normal healthy control and schizophrenia groups. - Ilwoo Lyu; Hakmook Kang; Neil D. Woodward; Bennett A. Landman (Image Processing, 2018)

Group-wise shape correspondence of variable and complex objects. - Ilwoo Lyu; Jonathan Perdomo; Gabriel S. Yapuncich; Beatriz Paniagua; Doug M. Boyer; Martin A. Styner (Image Processing, 2018)

SHARD: spherical harmonic-based robust outlier detection for HARDI methods. - Vishwesh Nath; Kurt G. Schilling; Allison E. Hainline; Prasanna Parvathaneni; Justin A. Blaber; Ilwoo Lyu; Adam W. Anderson; Hakmook Kang; Allen T. Newton; Baxter P. Rogers; Bennett A. Landman (Image Processing, 2018)

Constructing statistically unbiased cortical surface templates using feature-space covariance. - Prasanna Parvathaneni; Ilwoo Lyu; Yuankai Huo; Justin A. Blaber; Allison E. Hainline; Hakmook Kang; Neil D. Woodward; Bennett A. Landman (Image Processing, 2018)

Inter-Scanner Harmonization of High Angular Resolution DW-MRI using Null Space Deep Learning. - Vishwesh Nath; Prasanna Parvathaneni; Colin B. Hansen; Allison E. Hainline; Camilo Bermudez; Samuel Remedios; Justin A. Blaber; Kurt G. Schilling; Ilwoo Lyu; Vaibhav A. Janve; Yurui Gao; Iwona Stepniewska; et al. (CoRR, 2018)

Towards Portable Large-Scale Image Processing with High-Performance Computing. - Yuankai Huo; Justin A. Blaber; Stephen M. Damon; Brian D. Boyd; Shunxing Bao; Prasanna Parvathaneni; Camilo Bermudez; Shikha Chaganti; Vishwesh Nath; Jasmine M. Greer; Ilwoo Lyu; William R. French; et al. (J. Digit. Imaging, 2018)

A cortical shape-adaptive approach to local gyrification index. - Ilwoo Lyu; Sun Hyung Kim; Jessica B. Girault; John H. Gilmore; Martin A. Styner (Medical Image Anal., 2018)

TRACE: A Topological Graph Representation for Automatic Sulcal Curve Extraction. - Ilwoo Lyu; Sun Hyung Kim; Neil D. Woodward; Martin A. Styner; Bennett A. Landman (IEEE Trans. Medical Imaging, 2018)

Fast Polynomial Approximation to Heat Diffusion in Manifolds. - Shih-Gu Huang; Ilwoo Lyu; Anqi Qiu; Moo K. Chung (MICCAI (4), 2019)

Enabling Multi-shell b-Value Generalizability of Data-Driven Diffusion Models with Deep SHORE. - Vishwesh Nath; Ilwoo Lyu; Kurt G. Schilling; Prasanna Parvathaneni; Colin B. Hansen; Yuankai Huo; Vaibhav A. Janve; Yurui Gao; Iwona Stepniewska; Adam W. Anderson; Bennett A. Landman (MICCAI (3), 2019)

Cortical Surface Parcellation Using Spherical Convolutional Neural Networks. - Prasanna Parvathaneni; Shunxing Bao; Vishwesh Nath; Neil D. Woodward; Daniel O. Claassen; Carissa J. Cascio; David H. Zald; Yuankai Huo; Bennett A. Landman; Ilwoo Lyu (MICCAI (3), 2019)

Harmonizing 1.5T/3T diffusion weighted MRI through development of deep learning stabilized microarchitecture estimators. - Vishwesh Nath; Samuel Remedios; Prasanna Parvathaneni; Colin B. Hansen; Roza G. Bayrak; Camilo Bermudez; Justin A. Blaber; Kurt G. Schilling; Vaibhav A. Janve; Yurui Gao; Yuankai Huo; Ilwoo Lyu; et al. (Image Processing, 2019)

Enabling Multi-Shell b-Value Generalizability of Data-Driven Diffusion Models with Deep SHORE. - Vishwesh Nath; Ilwoo Lyu; Kurt G. Schilling; Prasanna Parvathaneni; Colin B. Hansen; Yucheng Tang; Yuankai Huo; Vaibhav A. Janve; Yurui Gao; Iwona Stepniewska; Adam W. Anderson; Bennett A. Landman (CoRR, 2019)

Fast Polynomial Approximation of Heat Diffusion on Manifolds and Its Application to Brain Sulcal and Gyral Graph Pattern Analysis. - Shih-Gu Huang; Ilwoo Lyu; Anqi Qiu; Moo K. Chung (CoRR, 2019)

Hierarchical spherical deformation for cortical surface registration. - Ilwoo Lyu; Hakmook Kang; Neil D. Woodward; Martin A. Styner; Bennett A. Landman (Medical Image Anal., 2019)

Automatic Labeling of Cortical Sulci Using Spherical Convolutional Neural Networks in a Developmental Cohort. - Lingyan Hao; Shunxing Bao; Yucheng Tang; Riqiang Gao; Prasanna Parvathaneni; Jacob A. Miller; Willa Voorhies; Jewelia Yao; Silvia A. Bunge; Kevin S. Weiner; Bennett A. Landman; Ilwoo Lyu (ISBI, 2020)

Fast Polynomial Approximation of Heat Kernel Convolution on Manifolds and Its Application to Brain Sulcal and Gyral Graph Pattern Analysis. - Shih-Gu Huang; Ilwoo Lyu; Anqi Qiu; Moo K. Chung (IEEE Trans. Medical Imaging, 2020)

Random Multi-Channel Image Synthesis for Multiplexed Immunofluorescence Imaging. - Shunxing Bao; Yucheng Tang; Ho Hin Lee; Riqiang Gao; Sophie Chiron; Ilwoo Lyu; Lori A. Coburn; Keith T. Wilson; Joseph T. Roland; Bennett A. Landman; Yuankai Huo (COMPAY@MICCAI, 2021)

From Brain to Body: Learning Low-Frequency Respiration and Cardiac Signals from fMRI Dynamics. - Roza G. Bayrak; Colin B. Hansen; Jorge Alberto Salas; Nafis Ahmed; Ilwoo Lyu; Yuankai Huo; Catie Chang (MICCAI (7), 2021)

Establishing surface correspondence for post-surgical cortical thickness changes in temporal lobe epilepsy. - Yue Liu 003; Dario J. Englot; Victoria L. Morgan; Warren D. Taylor; Ying Wei 007; Ipek Oguz; Bennett A. Landman; Ilwoo Lyu (Image Processing, 2021)

Joint cortical surface and structural connectivity analysis of Alzheimer's disease. - Leon Y. Cai; Cailey I. Kerley; Chang Yu 008; Katherine S. Aboud; Lori L. Beason-Held; Andrea T. Shafer; Susan M. Resnick; Lori C. Jordan; Adam W. Anderson; Kurt G. Schilling; Ilwoo Lyu; Bennett A. Landman (Image Processing, 2021)

Validation of group-wise registration for surface-based functional MRI analysis. - Chang Yu 008; Yue Liu 003; Leon Y. Cai; Cailey I. Kerley; Kaiwen Xu; Warren D. Taylor; Hakmook Kang; Andrea T. Shafer; Lori L. Beason-Held; Susan M. Resnick; Bennett A. Landman; Ilwoo Lyu (Image Processing, 2021)

High-resolution 3D abdominal segmentation with random patch network fusion. - Yucheng Tang; Riqiang Gao; Ho Hin Lee; Shizhong Han; Yunqiang Chen; Dashan Gao 001; Vishwesh Nath; Camilo Bermudez; Michael R. Savona; Richard G. Abramson; Shunxing Bao; Ilwoo Lyu; et al. (Medical Image Anal., 2021)

Labeling lateral prefrontal sulci using spherical data augmentation and context-aware training. - Ilwoo Lyu; Shuxing Bao; Lingyan Hao; Jewelia Yao; Jacob A. Miller; Willa Voorhies; Warren D. Taylor; Silvia A. Bunge; Kevin S. Weiner; Bennett A. Landman (NeuroImage, 2021)

Pandora: 4-D White Matter Bundle Population-Based Atlases Derived from Diffusion MRI Fiber Tractography. - Colin B. Hansen; Qi Yang 004; Ilwoo Lyu; Francois Rheault; Cailey I. Kerley; Bramsh Qamar Chandio; Shreyas Fadnavis; Owen A. Williams; Andrea T. Shafer; Susan M. Resnick; David H. Zald; Laurie E. Cutting; et al. (Neuroinformatics, 2021)

Body Part Regression With Self-Supervision. - Yucheng Tang; Riqiang Gao; Shizhong Han; Yunqiang Chen; Dashan Gao 001; Vishwesh Nath; Camilo Bermudez; Michael R. Savona; Shunxing Bao; Ilwoo Lyu; Yuankai Huo; Bennett A. Landman (IEEE Trans. Medical Imaging, 2021)

Learning Subject-Specific Functional Parcellations from Cortical Surface Measures. - Roza G. Bayrak; Ilwoo Lyu; Catie Chang (PRIME@MICCAI, 2022)

Ultra-high-resolution mapping of cortical layers 3T-guided 7T MRI. - Karthik Ramadass; Francois Rheault; Leon Y. Cai; Lucas W. Remedios; Micah D'Archangel; Ilwoo Lyu; Laura A. Barquero; Allen T. Newton; Laurie E. Cutting; Yuankai Huo; Bennett A. Landman (Image Processing, 2022)

Integrating the BIDS Neuroimaging Data Format and Workflow Optimization for Large-Scale Medical Image Analysis. - Shunxing Bao; Brian D. Boyd; Praitayini Kanakaraj; Karthik Ramadass; Francisco A. C. Meyer; Yuqian Liu; William E. Duett; Yuankai Huo; Ilwoo Lyu; David H. Zald; Seth A. Smith; Baxter P. Rogers; et al. (J. Digit. Imaging, 2022)

SPHARM-Net: Spherical Harmonics-Based Convolution for Cortical Parcellation. - Seungbo Ha; Ilwoo Lyu (IEEE Trans. Medical Imaging, 2022)

Unsupervised Learning of Cortical Surface Registration Using Spherical Harmonics. - Seungeun Lee; Sunghwa Ryu; Seunghwan Lee; Ilwoo Lyu (ShapeMI@MICCAI, 2023)

Hierarchical particle optimization for cortical shape correspondence in temporal lobe resection. - Yue Liu 003; Shunxing Bao; Dario J. Englot; Victoria L. Morgan; Warren D. Taylor; Ying Wei 007; Ipek Oguz; Bennett A. Landman; Ilwoo Lyu (Comput. Biol. Medicine, 2023)

Prediction of autism spectrum disorder using epigenetic, brain, and sensory behavioral factors. - Yong Jeon Cheong; Jihyun Bae; Seonkyoung Lee; Ro Ji Hyeong; Hirotaka Kosaka; Ilwoo Lyu; Minyoung Jung (BCI, 2024)

Extensive Spherical Region Enlargement with Isotropic Deformation for Sulcal Labeling. - Seunghwan Lee; Jiwon Son; Seungeun Lee; Ethan H. Willbrand; Benjamin J. Parker; Kevin S. Weiner; Ilwoo Lyu (ISBI, 2025)

Leveraging Input-Level Feature Deformation With Guided-Attention for Sulcal Labeling. - Seungeun Lee; Seunghwan Lee; Ethan H. Willbrand; Benjamin J. Parker; Silvia A. Bunge; Kevin S. Weiner; Ilwoo Lyu (IEEE Trans. Medical Imaging, 2025)