Quantification of anisotropy and orientation in 3D electron microscopy and diffusion tensor imaging in injured rat brain. - Raimo A. Salo; Ilya Belevich; Eppu Manninen; Eija Jokitalo; Olli Gröhn; Alejandra Sierra (NeuroImage, 2018)

Code-free development and deployment of deep segmentation models for digital pathology. - Henrik Sahlin Pettersen; Ilya Belevich; Elin Synnøve Røyset; Erik Smistad; Eija Jokitalo; Ingerid Reinertsen; Ingunn Bakke; André Pedersen (CoRR, 2021)

Assessment of the structural complexity of diffusion MRI voxels using 3D electron microscopy in the rat brain. - Raimo A. Salo; Ilya Belevich; Eija Jokitalo; Olli Gröhn; Alejandra Sierra (NeuroImage, 2021)

DeepMIB: User-friendly and open-source software for training of deep learning network for biological image segmentation. - Ilya Belevich; Eija Jokitalo (PLoS Comput. Biol., 2021)

gACSON software for automated segmentation and morphology analyses of myelinated axons in 3D electron microscopy. - Andrea Behanova; Ali Abdollahzadeh; Ilya Belevich; Eija Jokitalo; Alejandra Sierra; Jussi Tohka (Comput. Methods Programs Biomed., 2022)

Segment Anything for Dendrites from Electron Microscopy. - Zewen Zhuo; Ilya Belevich; Ville Leinonen; Eija Jokitalo; Tarja Malm; Alejandra Sierra; Jussi Tohka (IPAS, 2025)