A Cellular Automaton to Model the Development of Primary Shoot Meristems of Arabidopsis thaliana. - Ilya R. Akberdin; Evgeniy A. Ozonov; Victoria V. Mironova; Nadezda A. Omelyanchuk; Vitali A. Likhoshvai; Dmytry N. Gorpinchenko; Nikolay A. Kolchanov (J. Bioinform. Comput. Biol., 2007)

MAMMOTh: A new database for curated mathematical models of biomolecular systems. - Fedor V. Kazantsev; Ilya R. Akberdin; Sergey A. Lashin; Natalia Ree; Vladimir Timonov; Alexander V. Ratushny; Tamara M. Khlebodarova; Vitali A. Likhoshvai (J. Bioinform. Comput. Biol., 2018)

BioUML: an integrated environment for systems biology and collaborative analysis of biomedical data. - Fedor A. Kolpakov; Ilya R. Akberdin; Timur A. Kashapov; llya Kiselev; Semyon Kolmykov; Yury V. Kondrakhin; Elena Kutumova; Nikita Mandrik; Sergey S. Pintus; Anna Ryabova; Ruslan N. Sharipov; Ivan S. Yevshin; et al. (Nucleic Acids Res., 2019)

BioUML - towards a universal research platform. - Fedor A. Kolpakov; Ilya R. Akberdin; Ilya Kiselev; Semyon Kolmykov; Yury V. Kondrakhin; Mikhail Kulyashov; Elena Kutumova; Sergey S. Pintus; Anna Ryabova; Ruslan N. Sharipov; Ivan S. Yevshin; Sergey Zhatchenko; et al. (Nucleic Acids Res., 2022)