AGATHA: Automatic Graph Mining And Transformer based Hypothesis Generation Approach. - Justin Sybrandt; Ilya Tyagin; Michael Shtutman; Ilya Safro (CIKM, 2020)

Accelerating COVID-19 Research with Graph Mining and Transformer-Based Learning. - Ilya Tyagin; Ankit Kulshrestha; Justin Sybrandt; Krish Matta; Michael Shtutman; Ilya Safro (AAAI, 2022)

Towards Practical Explainability with Cluster Descriptors. - Xiaoyuan Liu 001; Ilya Tyagin; Hayato Ushijima-Mwesigwa; Indradeep Ghosh; Ilya Safro (ICDM (Workshops), 2022)

Literature-based Discovery for Landscape Planning. - David Marasco; Ilya Tyagin; Justin Sybrandt; James H. Spencer; Ilya Safro (CoRR, 2023)

Dyport: Dynamic Importance-based Hypothesis Generation Benchmarking Technique. - Ilya Tyagin; Ilya Safro (CoRR, 2023)

Dyport: dynamic importance-based biomedical hypothesis generation benchmarking technique. - Ilya Tyagin; Ilya Safro (BMC Bioinform., 2024)

AI-based mining of biomedical literature: Applications for drug repurposing for the treatment of dementia. - Aliaksandra Sikirzhytskaya; Ilya Tyagin; S. Scott Sutton; Michael D. Wyatt; Ilya Safro; Michael Shtutman (Artif. Intell. Medicine, 2025)

QAOA-GPT: Efficient Generation of Adaptive and Regular Quantum Approximate Optimization Algorithm Circuits. - Ilya Tyagin; Marwa H. Farag; Kyle Sherbert; Karunya Shirali; Yuri Alexeev; Ilya Safro (CoRR, 2025)