What Can Systems Theory of Networks Offer to Biology? - Indika Rajapakse; Mark Groudine; Mehran Mesbahi (PLoS Comput. Biol., 2012)

Dynamic tensor time series modeling and analysis. - Amit Surana; Geoff Patterson; Indika Rajapakse (CDC, 2016)

Spectral identification of topological domains. - Jie Chen 022; Alfred O. Hero III; Indika Rajapakse (Bioinform., 2016)

Mathematics of the Genome. - Indika Rajapakse; Steve Smale (Found. Comput. Math., 2017)

The Pitchfork Bifurcation. - Indika Rajapakse; Steve Smale (Int. J. Bifurc. Chaos, 2017)

First-Order Bifurcation Detection for Dynamic Complex Networks. - Sijia Liu 001; Pin-Yu Chen; Indika Rajapakse; Alfred O. Hero III (ICASSP, 2018)

4D nucleome Analysis Toolbox: analysis of Hi-C data with abnormal karyotype and time series capabilities. - Laura Seaman; Indika Rajapakse (Bioinform., 2018)

Latent Heterogeneous Multilayer Community Detection. - Hafiz Tiomoko Ali; Sijia Liu 001; Yasin Yilmaz; Romain Couillet; Indika Rajapakse; Alfred O. Hero III (ICASSP, 2019)

Fast Incremental von Neumann Graph Entropy Computation: Theory, Algorithm, and Applications. - Pin-Yu Chen; Lingfei Wu 001; Sijia Liu 001; Indika Rajapakse (ICML, 2019)

Data-Guided Model Reduction for Multilinear Time Invariant Systems. - Can Chen 003; Amit Surana; Anthony M. Bloch; Indika Rajapakse (CoRR, 2019)

Controllability of Uniform Hypergraphs. - Can Chen 003; Anthony M. Bloch; Indika Rajapakse (CoRR, 2020)

RAILS: A Robust Adversarial Immune-inspired Learning System. - Ren Wang 008; Tianqi Chen; Stephen Lindsly; Alnawaz Rehemtulla; Alfred O. Hero III; Indika Rajapakse (CoRR, 2020)

Tensor Entropy for Uniform Hypergraphs. - Can Chen 003; Indika Rajapakse (IEEE Trans. Netw. Sci. Eng., 2020)

Hypergraph Dissimilarity Measures. - Amit Surana; Can Chen 003; Indika Rajapakse (CoRR, 2021)

Immuno-mimetic Deep Neural Networks (Immuno-Net). - Ren Wang 008; Tianqi Chen; Stephen Lindsly; Cooper Stansbury; Indika Rajapakse; Alfred Olivier Hero (CoRR, 2021)

Multilinear Control Systems Theory. - Can Chen 003; Amit Surana; Anthony M. Bloch; Indika Rajapakse (SIAM J. Control. Optim., 2021)

Controllability of Hypergraphs. - Can Chen 003; Amit Surana; Anthony M. Bloch; Indika Rajapakse (IEEE Trans. Netw. Sci. Eng., 2021)

RAILS: A Robust Adversarial Immune-Inspired Learning System. - Ren Wang 008; Tianqi Chen; Stephen Lindsly; Cooper Stansbury; Alnawaz Rehemtulla; Indika Rajapakse; Alfred O. Hero III (IEEE Access, 2022)

ASK: Adversarial Soft k-Nearest Neighbor Attack and Defense. - Ren Wang 008; Tianqi Chen; Philip Yao; Sijia Liu 001; Indika Rajapakse; Alfred O. Hero III (IEEE Access, 2022)

Observability of Hypergraphs. - Joshua Pickard; Amit Surana; Anthony M. Bloch; Indika Rajapakse (CDC, 2023)

HAT: Hypergraph analysis toolbox. - Joshua Pickard; Can Chen 003; Rahmy Salman; Cooper Stansbury; Sion Kim; Amit Surana; Anthony M. Bloch; Indika Rajapakse (PLoS Comput. Biol., 2023)

Hypergraph Similarity Measures. - Amit Surana; Can Chen 003; Indika Rajapakse (IEEE Trans. Netw. Sci. Eng., 2023)

Bioinformatics Retrieval Augmentation Data (BRAD) Digital Assistant. - Joshua Pickard; Marc Andrew Choi; Natalie Oliven; Cooper Stansbury; Jillian Cwycyshyn; Nicholas Galioto; Alex A. Gorodetsky; Alvaro Velasquez; Indika Rajapakse (CoRR, 2024)

Kronecker Product of Tensors and Hypergraphs: Structure and Dynamics. - Joshua Pickard; Can Chen 003; Cooper Stansbury; Amit Surana; Anthony M. Bloch; Indika Rajapakse (SIAM J. Matrix Anal. Appl., 2024)