Conformational Preferences of Modified Uridines: Comparison of AMBER Derived Force Fields. - Indrajit Deb; Joanna Sarzynska; Lennart Nilsson; Ansuman Lahiri (J. Chem. Inf. Model., 2014)

Reparameterizations of the χ Torsion and Lennard-Jones σ Parameters Improve the Conformational Characteristics of Modified Uridines. - Indrajit Deb; Rupak Pal; Joanna Sarzynska; Ansuman Lahiri (J. Comput. Chem., 2016)

Experiences with managing data parallel computational workflows for High-throughput Fragment Molecular Orbital (FMO) Calculations. - Dimuthu Wannipurage; Indrajit Deb; Eroma Abeysinghe; Sudhakar Pamidighantam; Suresh Marru; Marlon E. Pierce; Aaron T. Frank (CoRR, 2022)

Data-informed reparameterization of modified RNA and the effect of explicit water models: application to pseudouridine and derivatives. - Nivedita Dutta; Indrajit Deb; Joanna Sarzynska; Ansuman Lahiri (J. Comput. Aided Mol. Des., 2022)