PALSSE: A program to delineate linear secondary structural elements from protein structures. - Indraneel Majumdar; S. Sri Krishna; Nick V. Grishin (BMC Bioinform., 2005)

Searching for three-dimensional secondary structural patterns in proteins with ProSMoS. - Shuoyong Shi; Yi Zhong; Indraneel Majumdar; S. Sri Krishna; Nick V. Grishin (Bioinform., 2007)

Analysis of CASP8 targets, predictions and assessment methods. - Shuoyong Shi; Jimin Pei; Ruslan Sadreyev; Lisa N. Kinch; Indraneel Majumdar; Jing Tong; Hua Cheng; Bong-Hyun Kim; Nick V. Grishin (Database J. Biol. Databases Curation, 2009)