UPC-CHECK: a scalable tool for detecting run-time errors in Unified Parallel C. - James Coyle; Indranil Roy; Marina Kraeva; Glenn R. Luecke (Comput. Sci. Res. Dev., 2013)

Finding Motifs in Biological Sequences Using the Micron Automata Processor. - Indranil Roy; Srinivas Aluru (IPDPS, 2014)

Shaping Tunes: Sharing Musical Information Across Cultural Boundaries. - Indranil Roy (LMAC, 2015)

Algorithmic techniques for the micron automata processor. - Indranil Roy (2015)

Programming Techniques for the Automata Processor. - Indranil Roy; Ankit Srivastava; Srinivas Aluru (ICPP, 2016)

Algorithmic Techniques for Solving Graph Problems on the Automata Processor. - Indranil Roy; Nagakishore Jammula; Srinivas Aluru (IPDPS, 2016)

High Performance Pattern Matching Using the Automata Processor. - Indranil Roy; Ankit Srivastava; Marziyeh Nourian; Michela Becchi; Srinivas Aluru (IPDPS, 2016)

Parallel Interval Stabbing on the Automata Processor. - Indranil Roy; Ankit Srivastava; Matt Grimm; Srinivas Aluru (IA3@SC, 2016)

Towards Machine Learning on the Automata Processor. - Tommy Tracy II; Yao Fu; Indranil Roy; Eric Jonas; Paul Glendenning (ISC, 2016)

Discovering Motifs in Biological Sequences Using the Micron Automata Processor. - Indranil Roy; Srinivas Aluru (IEEE ACM Trans. Comput. Biol. Bioinform., 2016)

Efficient Any Source Capacity-Constrained Overlay Multicast in LDE-Based P2P Networks. - Koushik Maddali; Indranil Roy; Koushik Sinha; Bidyut Gupta; Henry Hexmoor; Swathi Kaluvakuri (ANTS, 2018)

Efficient Any Source Overlay Multicast In CRT-Based P2P Networks - A Capacity-Constrained Approach. - Indranil Roy; Koushik Maddali; Swathi Kaluvakuri; Banafsheh Rekabdar; Ziping Liu; Bidyut Gupta; Narayan C. Debnath (INDIN, 2019)

Evaluating High Performance Pattern Matching on the Automata Processor. - Indranil Roy; Ankit Srivastava; Matt Grimm; Marziyeh Nourian; Michela Becchi; Srinivas Aluru (IEEE Trans. Computers, 2019)

MultiCon: A Semi-Supervised Approach for Predicting Drug Function from Chemical Structure Analysis. - Pracheta Sahoo; Indranil Roy; Zhuoyi Wang; Feng Mi; Lin Yu; Pradeep Balasubramani; Latifur Khan; J. Fraser Stoddart (J. Chem. Inf. Model., 2020)

Interval stabbing on the Automata Processor. - Indranil Roy; Ankit Srivastava; Matt Grimm; Srinivas Aluru (J. Parallel Distributed Comput., 2020)

Modeling Oxidation of AlCoCrFeNi High-Entropy Alloy Using Stochastic Cellular Automata. - Indranil Roy; Pratik K. Ray; Ganesh Balasubramanian (Entropy, 2022)

Securing RC Based P2P Networks: A Blockchain-based Access Control Framework utilizing Ethereum Smart Contracts for IoT and Web 3.0. - Saurav Ghosh; Reshmi Mitra; Indranil Roy; Bidyut Gupta (CoRR, 2024)

Scalable Consensus Framework with Adaptive Governance and Fault Tolerance for Blockchain Ecosystems. - Saurav Ghosh; S. M. Dedar Alam; Batuhan Tanrikulu; Reshmi Mitra; Indranil Roy (ACM Southeast Regional Conference, 2025)