Bayesian inference of protein conformational ensembles from limited structural data. - Wojciech Potrzebowski; Jill Trewhella; Ingemar André (PLoS Comput. Biol., 2018)

ZEAL: protein structure alignment based on shape similarity. - Filip Ljung; Ingemar André (Bioinform., 2021)

Atomistic simulation of protein evolution reveals sequence covariation and time-dependent fluctuations of site-specific substitution rates. - Christoffer Norn; Ingemar André (PLoS Comput. Biol., 2023)