Stylized facts of financial time series and hidden semi-Markov models. - Jan Bulla; Ingo Bulla (Comput. Stat. Data Anal., 2006)

jpHMM: Improving the reliability of recombination prediction in HIV-1. - Anne-Kathrin Schultz; Ming Zhang; Ingo Bulla; Thomas Leitner; Bette T. Korber; Burkhard Morgenstern; Mario Stanke (Nucleic Acids Res., 2009)

HIV classification using the coalescent theory. - Ingo Bulla; Anne-Kathrin Schultz; Fabian Schreiber; Ming Zhang; Thomas Leitner; Bette T. Korber; Burkhard Morgenstern; Mario Stanke (Bioinform., 2010)

hsmm - An R package for analyzing hidden semi-Markov models. - Jan Bulla; Ingo Bulla; Oleg Nenadic (Comput. Stat. Data Anal., 2010)

Detection of viral sequence fragments of HIV-1 subfamilies yet unknown. - Thomas Unterthiner; Anne-Kathrin Schultz; Jan Bulla; Burkhard Morgenstern; Mario Stanke; Ingo Bulla (BMC Bioinform., 2011)

jpHMM: recombination analysis in viruses with circular genomes such as the hepatitis B virus. - Anne-Kathrin Schultz; Ingo Bulla; Mariama Abdou-Chekaraou; Emmanuel Gordien; Burkhard Morgenstern; Fabien Zoulim; Paul Dény; Mario Stanke (Nucleic Acids Res., 2012)

A model-based information sharing protocol for profile Hidden Markov Models used for HIV-1 recombination detection. - Ingo Bulla; Anne-Kathrin Schultz; Christophe Chesneau; Tanya Mark; Florin Serea (BMC Bioinform., 2014)

Numerical optimal control for HIV prevention with dynamic budget allocation. - Dmitry Gromov; Ingo Bulla; Ethan O. Romero-Severson; Oana-Silvia Serea (CoRR, 2016)

Notos - a galaxy tool to analyze CpN observed expected ratios for inferring DNA methylation types. - Ingo Bulla; Benoît Aliaga; Virginia Lacal; Jan Bulla; Christoph Grunau; Cristian Chaparro (BMC Bioinform., 2018)