DNA sequence variation among humans and apes (abstract only). - Henrik Kaessmann; Ingo Ebersberger; Victor Wiebe; Rikard Erlandsson; Jim F. Wilson; Carsten Schwarz; Michaela Winkler; Svante Pääbo (RECOMB, 2000)

FACT: Functional annotation transfer between proteins with similar feature architectures. - Tina Koestler; Arndt von Haeseler; Ingo Ebersberger (BMC Bioinform., 2010)

Gearing up to handle the mosaic nature of life in the quest for orthologs. - Kristoffer Forslund; Cécile Pereira; Salvador Capella-Gutiérrez; Alan W. Sousa da Silva; Adrian M. Altenhoff; Jaime Huerta-Cepas; Matthieu Muffato; Mateus Patricio; Klaas Vandepoele; Ingo Ebersberger; Judith A. Blake; Jesualdo Tomás Fernández-Breis; et al. (Bioinform., 2018)

PhyloProfile: dynamic visualization and exploration of multi-layered phylogenetic profiles. - Ngoc-Vinh Tran; Bastian Greshake Tzovaras; Ingo Ebersberger (Bioinform., 2018)

The Quest for Orthologs orthology benchmark service in 2022. - Yannis Nevers; Tamsin E. M. Jones; Dushyanth Jyothi; Bethan Yates; Meritxell Ferret; Laura Portell-Silva; Laia Codó; Salvatore Cosentino; Marina Marcet-Houben; Anna Vlasova; Laetitia Poidevin; Arnaud Kress; et al. (Nucleic Acids Res., 2022)

FAS: assessing the similarity between proteins using multi-layered feature architectures. - Julian Dosch; Holger Bergmann; Vinh Tran; Ingo Ebersberger (Bioinform., 2023)